Hg_chrom7_TN10mRNA_14263
Organism: Heterodera glycines Gene Locus: chr7:6090602-6097614 Feature type: polypeptideProtein Sequence
Length: 1,684
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 0.69 | 0.421 | 0.307 | 3.118 | 1.096 | 0.403 | 2.316 | 0.686 | 0.658 | 0.729 | 0.419 | 0.643 | 1.348 | 0.751 | 0.721 | 3.047 | 0.531 | 0.183 | 0.157 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13461
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
RRQRRRRRR,RKQTQILDEKRREQR
|
— | — | — | — |
1-22
|
0.985
|
1.000
|
1.000
|
1.000
|
0.198
|
0.032
|
0.011
|
0.250
|
0.149
|
0.164
|
0.266
|
0.061
|
0.734
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011398
|
1.000
|
1.000
|
Hsc_gene_8311.t1
|
— | — | — |
KAI3409740.1 von Willebrand factor type A domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.948|GO:0110165_0.945|GO:0071944_0.882|GO:0030312_0.563|GO:0031012_0.551|GO:0062023_0.551|GO:0060102_0.540
|
IPR001507+1212-1482_1229-1486+|IPR051962+1229-1579+
|
SM00241+1229-1486+
|
— | — |
PTHR22907+1229-1579+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-1206;1584-1684
|
2.000
|
1-36;1207-1583
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
186810.550
|
4.298
|
-172.000
|
34.145
|
7.720
|
65.024
|
34.976
|
13.124
|
21.021
|
52.138
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
633.273
|
188.173
|
102.214
|
104.513
|
140.359
|
492.139
|
454.064
|
305.628
|
566.424
|
1675.594
|
1200.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.112
|
-0.985
|
— |
0.391
|
1.826
|
— |
-0.801
|
0.718
|
— | — | — | — | — |