Hg_chrom7_TN10mRNA_14264
Organism: Heterodera glycines Gene Locus: chr7:6098538-6100922 Feature type: polypeptideProtein Sequence
Length: 312
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 0.82 | 0.524 | 0.553 | 0.641 | 1.068 | 0.954 | 2.564 | 0.356 | 1.126 | 0.486 | 1.32 | 1.068 | 0.801 | 2.616 | 1.648 | 0.946 | 0.971 | 1.479 | 0.943 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13462
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RHRR,RRQKHPRRGHKKLRW,RRNGQQRRGRHSRRRQKS
|
35-72
|
0.988
|
6-52
|
0.999
|
— | — |
0.068
|
— | — |
0.146
|
0.195
|
0.018
|
0.113
|
0.087
|
0.036
|
0.168
|
0.039
|
0.220
|
0.862
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011399
|
1.000
|
1.000
|
Hsc_gene_8312.t1
|
Hsc_gene_8312.t1
|
— |
Q11184.2 Protein let-756 [Caenorhabditis elegans]
|
AVA09663.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008083
|
GO:0008150_0.937|GO:0009987_0.845|GO:0065007_0.809|GO:0050789_0.794|GO:0050794_0.706|GO:0005575_0.691|GO:0110165_0.688|GO:0050896_0.631|GO:0007154_0.612|GO:0032501_0.612|GO:0023052_0.609|GO:0003674_0.571|GO:0051716_0.558|GO:0032502_0.546|GO:0048856_0.546|GO:0007275_0.527|GO:0007165_0.522|GO:0048731_0.511
|
IPR002209+14-233_98-233_100-229+|IPR008996+98-232+
|
SM00442+98-233+
|
PF00167+100-229+Fibroblast_growth_factor
|
— |
PTHR11486+14-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
280-312
|
1.000
|
1-279
|
3f1r_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
35610.270
|
11.616
|
37.000
|
27.885
|
14.103
|
52.885
|
47.115
|
21.154
|
6.731
|
49.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
532.462
|
2130.544
|
626.591
|
486.969
|
345.225
|
373.014
|
547.117
|
686.884
|
24.420
|
362.579
|
217.654
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.994
|
-2.267
|
-0.256
|
-0.528
|
— |
0.565
|
0.779
|
— |
-4.009
|
4.517
|
— | — | — |
No JSON data available for plots.