Hg_chrom7_TN10mRNA_14266
Organism: Heterodera glycines Gene Locus: chr7:6106673-6108948 Feature type: polypeptideProtein Sequence
Length: 351
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.464 | 2.054 | 0.363 | 0.589 | 0.855 | 0.95 | 0.577 | 2.279 | 1.33 | 1.309 | 0.777 | 0.67 | 1.978 | 1.041 | 1.221 | 1.058 | 1.074 | 1.079 | 0.877 | 0.754 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13464
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
mitochondria
|
— |
40-70
|
0.917
|
— | — |
1-35
|
— |
0.601
|
— |
1.000
|
0.121
|
0.022
|
0.002
|
0.235
|
0.203
|
0.482
|
0.343
|
0.199
|
0.877
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011401
|
1.000
|
1.000
|
Hsc_gene_8314.t1
|
Hsc_gene_8314.t1
|
— |
Q9U3P2.1 Synaptogenesis protein syg-2 [Caenorhabditis elegans]
|
KAI1725907.1 immunoglobulin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.864|GO:0110165_0.859|GO:0008150_0.833|GO:0016020_0.804|GO:0071944_0.751|GO:0005886_0.731|GO:0009987_0.725|GO:0003674_0.575|GO:0065007_0.574|GO:0050789_0.554|GO:0032501_0.541
|
IPR003597+175-237+|IPR003599+47-147+|IPR007110+42-145_150-248+|IPR013106+47-139+|IPR013783+43-147_148-250+|IPR036179+43-153_171-248+
|
SM00409+47-147+
|
PF07654+175-237+Immunoglobulin_C1-set_domain|PF07686+47-139+Immunoglobulin_V-set_domain
|
— |
PTHR45889+29-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
40270.150
|
10.062
|
22.000
|
22.792
|
15.385
|
49.288
|
50.712
|
15.670
|
7.123
|
47.863
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
588.605
|
79.998
|
234.781
|
236.043
|
596.498
|
359.198
|
1897.188
|
129.196
|
20.732
|
1234.760
|
714.462
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.319
|
1.425
|
— |
1.306
|
-0.718
|
2.411
|
-1.581
|
4.019
|
-6.034
|
— | — | — | — |