Hg_chrom7_TN10mRNA_14267
Organism: Heterodera glycines Gene Locus: chr7:6109793-6114371 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.552 | 1.057 | 1.114 | 0.477 | 1.91 | 0.912 | 0.776 | 1.482 | 1.01 | 0.801 | 1.467 | 2.558 | 0.933 | 0.722 | 1.412 | 0.96 | 0.551 | 0.898 | 1.216 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13465
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,PSEKRRI,PKKRRHEEKEIVRKKR,KKRRHEEKEIVRKKRNM,KKQSFDQIMERRNKLKKN,RKPKKQSFDQIMERRNKLK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.925
|
0.096
|
0.015
|
0.157
|
0.029
|
0.050
|
0.069
|
0.002
|
0.026
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002423
|
1.000
|
3.000
|
Hsc_gene_8315.t1;Hsc_gene_8315.t2;Hsc_gene_8315.t3
|
Hsc_gene_8315.t1;Hsc_gene_8315.t2;Hsc_gene_8315.t3
|
— |
Q10946.2 CWF19-like protein 2 homolog [Caenorhabditis elegans]
|
NP_001021125.1 CWF19-like protein 2 homolog [Caenorhabditis elegans];Q10946.2 CWF19-like protein 2 homolog [Caenorhabditis elegans];CCD61816.1 CWF19-like protein 2 homolog [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.910|GO:0110165_0.905|GO:0005622_0.879|GO:0043226_0.844|GO:0016020_0.822|GO:0043229_0.817|GO:0043227_0.776|GO:0043231_0.754|GO:0005634_0.693
|
IPR006767+395-492+|IPR006768+259-386+|IPR036265+237-407_262-396+|IPR040194+32-492+
|
— |
PF04676+395-492+Protein_similar_to_CwfJ_C-terminus_2|PF04677+259-386+Protein_similar_to_CwfJ_C-terminus_1
|
— |
PTHR12072+32-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-259
|
1.000
|
260-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
58615.310
|
6.783
|
2.500
|
37.154
|
10.474
|
55.336
|
44.664
|
19.565
|
17.589
|
43.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1392.100
|
3284.403
|
1210.859
|
1336.799
|
1577.876
|
1240.549
|
1120.294
|
1232.918
|
1619.085
|
749.737
|
1122.315
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.669
|
-1.434
|
0.251
|
0.207
|
-0.333
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.