Hg_chrom7_TN10mRNA_14271
Organism: Heterodera glycines Gene Locus: chr7:6120660-6122522 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.6 | 1.066 | 0.99 | 0.395 | 1.242 | 1.469 | 0.716 | 0.716 | 1.592 | 1.51 | 1.085 | 1.348 | 1.194 | 0.551 | 1.286 | 1.064 | 0.752 | 1.042 | 0.441 | 0.674 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13469
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKFVSKLPSIVEKRKSV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.352
|
0.247
|
0.050
|
0.569
|
0.209
|
0.355
|
0.212
|
0.073
|
0.110
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011405
|
1.000
|
1.000
|
Hsc_gene_8319.t1
|
Hsc_gene_8319.t1
|
— |
P34260.4 Vacuolar protein sorting-associated protein 33A [Caenorhabditis elegans]
|
KAH7731448.1 Sec1 family protein [Aphelenchus avenae]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016192
|
GO:0008150_0.669|GO:0009987_0.607|GO:0005575_0.588|GO:0110165_0.588|GO:0005622_0.546|GO:0016020_0.522|GO:0043226_0.501
|
IPR001619+2-347_3-345+|IPR027482+258-349+|IPR036045+2-348+|IPR043127+4-126+|IPR043155+130-223+
|
— |
PF00995+2-347+Sec1_family
|
— |
PTHR11679+3-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
39575.510
|
8.120
|
4.500
|
27.794
|
8.596
|
50.143
|
49.857
|
14.900
|
12.894
|
44.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1448.437
|
1838.510
|
1184.526
|
971.395
|
826.299
|
949.040
|
1192.129
|
1583.930
|
1120.580
|
2291.791
|
1789.843
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.865
|
-1.057
|
-0.177
|
-0.265
|
0.214
|
0.340
|
0.631
|
— | — | — | — | — | — |
No JSON data available for plots.