SCN Proteipedia

Hg_chrom7_TN10mRNA_14275

Organism: Heterodera glycines Gene Locus: chr7:6129529-6136683 Feature type: polypeptide

Protein Sequence

Length: 1,230

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.813	0.681	0.902	0.505	1.057	1.98	0.871	1.138	0.542	0.989	0.554	1.626	0.949	1.704	1.775	1.208	0.88	0.961	0.625	0.55	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13473	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.770

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	38-58	0.997	23-56	0.986	—	—	0.000	—	—	0.295	0.142	0.022	0.709	0.128	0.092	0.105	0.040	0.504	0.196

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011408	1.000	1.000	Hsc_gene_8322.t1	Hsc_gene_8322.t1	—	O95153.2 Peripheral-type benzodiazepine receptor-associated protein 1 [Homo sapiens]	NP_001380064.1 Variant SH3 domain protein [Caenorhabditis elegans];CCD73780.2 Variant SH3 domain protein [Caenorhabditis elegans]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.939\|GO:0110165_0.936\|GO:0008150_0.924\|GO:0009987_0.883\|GO:0016020_0.833\|GO:0005622_0.740\|GO:0003674_0.738\|GO:0065007_0.676\|GO:0050789_0.658\|GO:0050794_0.642\|GO:0051179_0.580\|GO:0043226_0.572\|GO:0051234_0.560\|GO:0006810_0.553\|GO:0030054_0.548\|GO:0005737_0.528\|GO:0043229_0.518	IPR001452+46-114_49-113_51-111_778-839_781-838_783-837_1050-1117_1053-1116_1060-1114+\|IPR003961+250-332_252-345_346-410_346-419_348-434_438-523_440-538+\|IPR013783+253-338_339-423_441-535+\|IPR036028+45-112_770-841_1044-1121+\|IPR036116+252-411_432-528+\|IPR040325+15-573+	SM00060+250-332_346-419_438-523+\|SM00326+49-113_781-838_1053-1116+	PF07653+51-111_783-837_1060-1114+Variant_SH3_domain	G3DSA:2.30.30.40:FF:000016+1048-1116+RIMS-binding_protein_2_isoform_X2	PTHR14234+15-573+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-41;108-169;610-742;838-1230	3.000	42-107;170-609;743-837	4z8a_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.885	136696.780	8.696	27.000	25.935	8.374	50.407	49.593	14.634	11.301	52.683

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1399.210	3531.768	2935.766	1657.663	1182.409	1077.562	540.342	1340.179	146.824	1411.794	869.664

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.496	-1.228	-0.716	-0.520	—	-0.985	—	-1.169	-3.378	—	—	—	—

No JSON data available for plots.

Back to Browser