SCN Proteipedia

Hg_chrom7_TN10mRNA_14276

Organism: Heterodera glycines Gene Locus: chr7:6138881-6142678 Feature type: polypeptide

Protein Sequence

Length: 712

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.67	0.817	1.226	0.581	1.287	1.116	0.702	1.545	1.217	1.291	1.298	1.9	1.209	0.756	1.089	0.903	0.668	0.936	0.648	0.991	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13474	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.889

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	RKADTGKMYAMKCLDKKRI	—	—	—	—	—	—	0.000	—	—	0.411	0.154	0.024	0.704	0.174	0.187	0.256	0.017	0.467	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011409	1.000	1.000	Hsc_gene_8323.t1	Hsc_gene_8323.t1	—	Q09639.2 G protein-coupled receptor kinase 2 [Caenorhabditis elegans]	KAI3413494.1 G protein-coupled receptor kinase 2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0004703\|GO:0005524\|GO:0006468\|GO:0007165	GO:0008150_0.904\|GO:0003674_0.885\|GO:0009987_0.865\|GO:0065007_0.834\|GO:0003824_0.832\|GO:0016740_0.832\|GO:0050789_0.829\|GO:0140096_0.816\|GO:0050896_0.814\|GO:0016772_0.813\|GO:0050794_0.804\|GO:0016301_0.791\|GO:0016773_0.790\|GO:0004672_0.777\|GO:0051716_0.774\|GO:0005575_0.764\|GO:0110165_0.761\|GO:0007154_0.754\|GO:0023052_0.746\|GO:0007165_0.733\|GO:0004674_0.666\|GO:0023051_0.604\|GO:0010646_0.602\|GO:0048583_0.592\|GO:0009966_0.588\|GO:0016020_0.580\|GO:0048519_0.572\|GO:0005622_0.564\|GO:0048523_0.548\|GO:0071944_0.513\|GO:0007186_0.505	IPR000239+171-183_230-248_475-492_500-513_514-531+\|IPR000719+191-460_192-460+\|IPR000961+461-528_461-540+\|IPR001849+563-663_564-665+\|IPR008271+314-326+\|IPR011009+187-521+\|IPR011993+560-671+\|IPR016137+54-175_55-174+\|IPR017441+197-220+\|IPR036305+30-184+\|IPR044926+46-536+	SM00133+461-540+\|SM00220+191-460+\|SM00233+564-665+\|SM00315+54-175+	PF00069+192-460+Protein_kinase_domain\|PF00615+55-174+Regulator_of_G_protein_signaling_domain	G3DSA:1.10.510.10:FF:000118+279-483+G_protein-coupled_receptor_kinase\|G3DSA:3.30.200.20:FF:000068+183-278+G_protein-coupled_receptor_kinase	PTHR24355+6-586+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-712	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.565	81440.330	7.072	7.000	31.461	11.657	49.719	50.281	16.994	14.466	44.101

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	saddlebrown	1318.822	2150.246	1841.493	1212.144	1987.030	1653.892	1615.634	1833.198	939.643	454.998	662.703

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.453	-0.964	-0.494	0.681	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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