SCN Proteipedia

Hg_chrom7_TN10mRNA_14277

Organism: Heterodera glycines Gene Locus: chr7:6144722-6150280 Feature type: polypeptide

Protein Sequence

Length: 938

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.116	0.967	1.105	0.588	1.51	1.421	0.901	0.906	0.782	1.268	0.791	1.066	0.77	0.759	1.218	0.853	0.752	1.163	1.066	0.658	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13475	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane\|lysosome_vacuole	—	KRRK,PKKQKKGGRRRDGMPKPTPKPKG	31-52	0.898	—	—	—	—	0.000	—	—	0.151	0.044	0.018	0.231	0.186	0.620	0.378	0.168	0.782	0.098

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011410	1.000	1.000	Hsc_gene_8324.t1	Hsc_gene_8324.t1	—	G5EGJ5.1 Receptor-type tyrosine-protein phosphatase-like ida-1 [Caenorhabditis elegans]	KAI1729340.1 protein-tyrosine phosphatase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0006470\|GO:0016311\|GO:0030141	GO:0008150_0.856\|GO:0005575_0.852\|GO:0110165_0.846\|GO:0009987_0.779\|GO:0016020_0.734\|GO:0071944_0.673\|GO:0005622_0.657\|GO:0065007_0.657\|GO:0005886_0.654\|GO:0003674_0.653\|GO:0050789_0.618\|GO:0043226_0.596\|GO:0050896_0.585\|GO:0050794_0.550\|GO:0043229_0.537\|GO:0005737_0.530\|GO:0043227_0.526	IPR000242+653-927_654-925_679-924_736-756_821-838_860-878_892-907_908-918+\|IPR000387+844-916+\|IPR003595+822-924+\|IPR016130+863-873+\|IPR029021+625-935_646-928+\|IPR033522+50-935+	SM00194+653-927+\|SM00404+822-924+	PF00102+679-924+Protein-tyrosine_phosphatase	G3DSA:3.90.190.10:FF:000017+625-935+receptor-type_tyrosine-protein_phosphatase-like_N_isoform_X2	PTHR46106+50-935+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-38;188-387;938-938	2.000	39-187;388-937	2qep_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.603	103673.540	4.806	-28.500	28.145	8.209	48.401	51.599	13.006	15.139	51.279

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	7727.992	12125.508	26799.369	10410.223	2669.700	1664.347	857.314	13334.799	3190.383	5969.203	4778.280

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.915	-0.358	-1.256	-1.995	-0.668	-0.946	2.904	-3.818	—	1.869	—	—	—

No JSON data available for plots.

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