Hg_chrom7_TN10mRNA_14278
Organism: Heterodera glycines Gene Locus: chr7:6150602-6152636 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 1.144 | 0.894 | 1.018 | 0.601 | 1.093 | 1.171 | 0.656 | 1.093 | 1.285 | 0.845 | 2.7 | 1.002 | 0.82 | 0.669 | 1.358 | 0.86 | 1.192 | 0.252 | 0.482 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13476
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.201
|
0.529
|
0.110
|
0.555
|
0.083
|
0.249
|
0.146
|
0.526
|
0.117
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011411
|
1.000
|
1.000
|
Hsc_gene_8326.t1
|
Hsc_gene_8326.t1
|
— |
Q9XTI0.1 Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Caenorhabditis elegans]
|
KHN83388.1 putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008442|GO:0016491|GO:0050661|GO:0051287
|
GO:0003674_0.683|GO:0005575_0.653|GO:0008150_0.638|GO:0110165_0.625|GO:0009987_0.547|GO:0005622_0.538|GO:0016020_0.501
|
IPR002204+6-19+|IPR006115+3-166+|IPR008927+168-299+|IPR011548+6-297+|IPR013328+169-303+|IPR015815+1-304+|IPR029154+169-296+|IPR036291+3-167+
|
— |
PF03446+3-166+NAD_binding_domain_of_6-phosphogluconate_dehydrogenase|PF14833+169-296+NAD-binding_of_NADP-dependent_3-hydroxyisobutyrate_dehydrogenase
|
G3DSA:1.10.1040.10:FF:000006+169-302+3-hydroxyisobutyrate_dehydrogenase
|
PTHR22981+2-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-305
|
2gf2_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
32398.360
|
7.510
|
3.000
|
18.689
|
6.885
|
42.623
|
57.377
|
10.164
|
8.525
|
57.377
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
550.808
|
899.621
|
665.513
|
871.809
|
1092.493
|
989.749
|
786.136
|
717.877
|
83.963
|
88.115
|
86.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.663
|
-0.182
|
0.497
|
0.293
|
— |
-0.322
|
-0.568
|
0.274
|
— | — |
4.577
|
— | — |
No JSON data available for plots.