SCN Proteipedia

Hg_chrom7_TN10mRNA_14279

Organism: Heterodera glycines Gene Locus: chr7:6153287-6157314 Feature type: polypeptide

Protein Sequence

Length: 515

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.926	0.813	0.777	1.54	0.647	1.643	0.74	2.427	0.777	0.997	0.5	1.371	1.564	1.382	1.189	1.498	0.477	1.03	1.344	0.4	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13477	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.950

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RKVFDLRWAYVEMCRRREN	37-64	0.959	21-63	0.943	—	—	0.000	—	—	0.627	0.143	0.016	0.598	0.131	0.071	0.181	0.014	0.132	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004600	2.000	1.000	Hsc_gene_8327.t1	—	—	P45897.1 Dwarfin sma-4 [Caenorhabditis elegans]	KAI1721182.1 MH2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006355	GO:0008150_0.906\|GO:0009987_0.826\|GO:0065007_0.816\|GO:0050789_0.805\|GO:0005575_0.790\|GO:0050794_0.788\|GO:0110165_0.776\|GO:0032501_0.739\|GO:0032502_0.715\|GO:0005622_0.706\|GO:0048856_0.703\|GO:0008152_0.689\|GO:0050896_0.680\|GO:0044238_0.672\|GO:0048518_0.665\|GO:0043170_0.663\|GO:0007275_0.656\|GO:0048522_0.656\|GO:0019222_0.653\|GO:0003674_0.644\|GO:0080090_0.637\|GO:0060255_0.633\|GO:0051716_0.623\|GO:0016020_0.618\|GO:0007154_0.595\|GO:0023052_0.589\|GO:0043226_0.583\|GO:0044237_0.583\|GO:0005488_0.579\|GO:0007165_0.578\|GO:0009058_0.578\|GO:0031323_0.568\|GO:0043229_0.562\|GO:0044249_0.556\|GO:0048519_0.552\|GO:0009059_0.549\|GO:0043227_0.547\|GO:0006139_0.545\|GO:0010467_0.541\|GO:0009889_0.540\|GO:0031326_0.540\|GO:0010556_0.538\|GO:0043231_0.537\|GO:0010468_0.536\|GO:0034654_0.533\|GO:0030154_0.527\|GO:0048869_0.527\|GO:0090304_0.527\|GO:0016070_0.524\|GO:0141187_0.523\|GO:0032774_0.522\|GO:0019219_0.517\|GO:0051252_0.517\|GO:0048513_0.516\|GO:0006351_0.512\|GO:0006355_0.512\|GO:2001141_0.512\|GO:0007166_0.511	IPR001132+290-501_291-501_292-515+\|IPR008984+266-512+\|IPR013790+109-513+\|IPR017855+284-515+	SM00524+290-501+	PF03166+291-501+MH2_domain	—	PTHR13703+109-513+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-515	1ygs_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.878	57098.920	7.949	17.500	22.136	13.592	45.437	54.563	13.981	8.155	53.786

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightcyan	1165.937	2220.518	1436.133	1135.768	902.557	715.305	1196.055	1202.864	500.325	1422.281	1027.157

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.859	-1.104	-0.229	-0.363	-0.321	0.751	0.643	—	—	—	—	—	—

No JSON data available for plots.

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