Hg_chrom7_TN10mRNA_14280
Organism: Heterodera glycines Gene Locus: chr7:6159044-6161719 Feature type: polypeptideProtein Sequence
Length: 512
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.636 | 1.363 | 0.781 | 0.471 | 1.074 | 0.952 | 0.791 | 1.562 | 1.128 | 1.056 | 0.621 | 1.608 | 1.573 | 1.164 | 1.315 | 1.479 | 0.672 | 0.858 | 1.202 | 1.034 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13478
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.338
|
0.268
|
0.085
|
0.518
|
0.218
|
0.299
|
0.161
|
0.018
|
0.118
|
0.172
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004601
|
2.000
|
1.000
|
Hsc_gene_8384.t2
|
Hsc_gene_8384.t1;Hsc_gene_8384.t2
|
— |
Q9W0E3.2 GATOR complex protein Iml1 [Drosophila melanogaster]
|
KAI1729330.1 vacuolar membrane-associated protein iml1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096
|
GO:0005575_0.906|GO:0110165_0.906|GO:0005622_0.832|GO:0005737_0.779|GO:0008150_0.759|GO:0009987_0.700|GO:0016020_0.669|GO:0065007_0.641|GO:0043226_0.629|GO:0050789_0.627|GO:0043229_0.610|GO:0050794_0.608|GO:0043227_0.605|GO:0050896_0.602|GO:0043231_0.577|GO:0051716_0.570|GO:0007154_0.537|GO:0048519_0.537|GO:0023052_0.533|GO:0048523_0.527|GO:0007165_0.525|GO:0023051_0.515|GO:0048583_0.515|GO:0010646_0.514|GO:0009966_0.508
|
IPR027244+357-391+|IPR048255+42-183+
|
— |
PF12257+42-183+Vacuolar_membrane-associated_protein_Iml1,_N-terminal_domain
|
— |
PTHR13179+357-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;400-449
|
2.000
|
6-399;450-512
|
8fw5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
57984.440
|
7.366
|
7.000
|
24.414
|
13.867
|
48.438
|
51.562
|
13.672
|
10.742
|
49.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1034.980
|
2732.587
|
2103.240
|
1430.353
|
1140.244
|
870.596
|
1116.169
|
1320.020
|
393.867
|
215.184
|
291.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.608
|
-1.071
|
-0.447
|
-0.359
|
-0.375
|
0.369
|
0.495
|
— | — | — |
2.566
|
— | — |
No JSON data available for plots.