Hg_chrom7_TN10mRNA_14283
Organism: Heterodera glycines Gene Locus: chr7:6167443-6168252 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.04 | 0.857 | 1.148 | 0.726 | 1.228 | 0.945 | 1.003 | 0.789 | 1.053 | 1.707 | 1.435 | 0.619 | 1.462 | 1.113 | 0.752 | 0.376 | 0.949 | 0.558 | 0.81 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13481
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.522
|
0.471
|
0.025
|
0.638
|
0.071
|
0.067
|
0.066
|
0.062
|
0.089
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004604
|
2.000
|
1.000
|
Hsc_gene_8399.t1
|
Hsc_gene_8399.t1
|
— |
Q9GYG4.1 Inosine triphosphate pyrophosphatase [Caenorhabditis elegans]
|
XP_041481748.1 inosine triphosphate pyrophosphatase-like [Lytechinus variegatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009143|GO:0047429
|
GO:0003674_0.741|GO:0005575_0.666|GO:0110165_0.654|GO:0008150_0.651|GO:0005622_0.601|GO:0009987_0.584|GO:0005737_0.569|GO:0008152_0.531|GO:0016020_0.526|GO:0043226_0.507|GO:0044238_0.501
|
IPR002637+6-189_8-185_9-185+|IPR027502+6-188+|IPR029001+1-189_5-188+
|
— |
PF01725+9-185+Ham1_family
|
G3DSA:3.90.950.10:FF:000003+2-189+Inosine_triphosphate_pyrophosphatase
|
PTHR11067+6-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
21051.230
|
6.706
|
0.500
|
28.421
|
10.000
|
44.211
|
55.789
|
14.737
|
13.684
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgrey
|
328.243
|
222.476
|
244.883
|
397.508
|
393.545
|
341.279
|
346.948
|
319.262
|
197.656
|
438.106
|
335.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.700
|
0.809
|
— | — | — | — |
0.264
|
— | — | — | — | — |
No JSON data available for plots.