Hg_chrom7_TN10mRNA_14285
Organism: Heterodera glycines Gene Locus: chr7:6170700-6174642 Feature type: polypeptideProtein Sequence
Length: 796
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.555 | 1.285 | 0.937 | 0.65 | 1.047 | 1.353 | 0.389 | 1.696 | 1.117 | 1.8 | 0.647 | 1.404 | 1.884 | 0.749 | 1.308 | 1.31 | 0.741 | 0.99 | 0.58 | 0.406 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13483
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.420
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.290
|
0.132
|
0.014
|
0.529
|
0.282
|
0.549
|
0.446
|
0.030
|
0.405
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011413
|
1.000
|
1.000
|
Hsc_gene_8397.t1
|
Hsc_gene_8397.t1
|
— |
P46578.1 Protein CLEC16A homolog [Caenorhabditis elegans]
|
KAI1721278.1 protein CLEC16A like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.969|GO:0005575_0.939|GO:0009987_0.937|GO:0110165_0.930|GO:0016020_0.877|GO:0005622_0.863|GO:0043226_0.819|GO:0071944_0.817|GO:0005886_0.815|GO:0043229_0.806|GO:0043227_0.771|GO:0005737_0.764|GO:0043231_0.753|GO:0065007_0.727|GO:0050789_0.709|GO:0050794_0.697|GO:0005773_0.660|GO:0012505_0.653|GO:0071840_0.613|GO:0016043_0.606|GO:0048518_0.591|GO:0048522_0.572|GO:0008152_0.569|GO:0006996_0.548|GO:0031982_0.520|GO:0051128_0.518
|
IPR016024+42-522+|IPR019155+48-196+|IPR039272+9-350+|IPR045820+242-358_363-721+
|
— |
PF09758+48-196+Uncharacterised_conserved_protein|PF19439+242-358_363-721+CLEC16A_C-terminal
|
— |
PTHR21481+9-350+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
725-796
|
1.000
|
1-724
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
91387.890
|
6.990
|
7.500
|
25.503
|
12.312
|
50.000
|
50.000
|
14.070
|
11.432
|
44.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1610.665
|
1574.657
|
1518.177
|
1207.505
|
1436.055
|
2462.142
|
3945.528
|
2674.368
|
550.350
|
1076.986
|
851.284
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.282
|
-0.520
|
-0.222
|
0.219
|
0.792
|
0.690
|
— |
0.704
|
— | — | — | — | — |
No JSON data available for plots.