Hg_chrom7_TN10mRNA_14288
Organism: Heterodera glycines Gene Locus: chr7:6180613-6181639 Feature type: polypeptideProtein Sequence
Length: 235
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.594 | 1.188 | 0.851 | 0.147 | 1.631 | 1.528 | 0.507 | 1.915 | 1.324 | 1.093 | 1.354 | 1.001 | 0.946 | 0.982 | 1.129 | 0.547 | 0.977 | 0.967 | 0.982 | 1.377 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13486
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.755
|
0.130
|
0.010
|
0.515
|
0.135
|
0.102
|
0.104
|
0.009
|
0.073
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004605
|
1.000
|
2.000
|
Hsc_gene_8394.t1;Hsc_gene_8394.t2
|
Hsc_gene_8394.t1;Hsc_gene_8394.t2
|
— |
O95619.1 YEATS domain-containing protein 4 [Homo sapiens]
|
KAI1726606.1 YEATS family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006355
|
GO:0005575_0.908|GO:0110165_0.895|GO:0005622_0.892|GO:0008150_0.822|GO:0043226_0.822|GO:0043229_0.809|GO:0016020_0.794|GO:0043227_0.752|GO:0043231_0.731|GO:0009987_0.671|GO:0005634_0.665|GO:0065007_0.636|GO:0050789_0.634|GO:0032991_0.619|GO:0043228_0.578|GO:0043232_0.578|GO:0050896_0.514|GO:0050794_0.501
|
IPR005033+20-228_22-165_48-129+|IPR038704+23-181+
|
— |
PF03366+48-129+YEATS_family
|
— |
PTHR47573+20-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;209-235
|
1.000
|
4-208
|
5xtz_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
27541.270
|
7.581
|
4.500
|
32.766
|
13.191
|
53.617
|
46.383
|
18.298
|
14.468
|
40.851
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
902.867
|
829.941
|
567.239
|
559.716
|
601.997
|
557.802
|
599.180
|
632.320
|
763.201
|
1747.068
|
1325.411
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.779
|
-0.705
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.