Hg_chrom7_TN10mRNA_14289
Organism: Heterodera glycines Gene Locus: chr7:6183420-6184238 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.557 | 0.495 | 1.354 | 0.917 | 0.887 | 1.227 | 0.38 | 1.596 | 1.3 | 1.078 | 0.887 | 1.564 | 1.773 | 1.023 | 1.954 | 0.912 | 0.959 | 0.806 | 1.227 | 1.095 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.543
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRFNRHWDDDLAMFRLKYK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.076
|
0.978
|
0.013
|
0.153
|
0.015
|
0.013
|
0.028
|
0.006
|
0.031
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011416
|
1.000
|
1.000
|
Hsc_gene_8392.t1
|
Hsc_gene_8392.t1
|
— |
Q489T9.1 Small ribosomal subunit protein bS18 [Colwellia psychrerythraea 34H]
|
KHN88347.1 28S ribosomal protein S18a, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.882|GO:0110165_0.882|GO:0005622_0.846|GO:0043226_0.793|GO:0016020_0.787|GO:0043229_0.786|GO:0005737_0.782|GO:0043227_0.751|GO:0043231_0.747|GO:0005739_0.569
|
IPR001648+47-155_75-122+|IPR036870+45-127_66-125+
|
— |
PF01084+75-122+Ribosomal_protein_S18
|
— |
PTHR13479+47-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
22256.540
|
8.881
|
8.000
|
31.383
|
14.894
|
50.532
|
49.468
|
18.617
|
12.766
|
43.085
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
972.855
|
587.678
|
893.480
|
895.863
|
1050.321
|
747.794
|
807.544
|
884.593
|
528.595
|
1659.566
|
1174.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.375
|
0.471
|
0.113
|
0.198
|
-0.476
|
— | — | — |
-1.770
|
— | — | — | — |
No JSON data available for plots.