Hg_chrom7_TN10mRNA_14295
Organism: Heterodera glycines Gene Locus: chr7:6199391-6201090 Feature type: polypeptideProtein Sequence
Length: 414
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 0.955 | 1.361 | 0.583 | 1.087 | 1.115 | 0.575 | 1.57 | 1.235 | 1.175 | 0.622 | 0.71 | 2.281 | 0.557 | 1.43 | 1.001 | 0.792 | 0.769 | 1.858 | 0.781 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13493
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
RYAKRLR
|
— | — | — | — |
1-23
|
— |
0.999
|
— |
0.000
|
0.213
|
0.225
|
0.097
|
0.374
|
0.671
|
0.268
|
0.589
|
0.033
|
0.157
|
0.431
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011421
|
1.000
|
1.000
|
Hsc_gene_8386.t1
|
Hsc_gene_8386.t1
|
— |
Q8WR51.1 GDP-fucose protein O-fucosyltransferase 2 [Caenorhabditis elegans]
|
KAI1721257.1 GDP-fucose protein o-fucosyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036066|GO:0046922
|
GO:0008150_0.892|GO:0003674_0.815|GO:0009987_0.812|GO:0008152_0.751|GO:0003824_0.733|GO:0044237_0.717|GO:0009058_0.701|GO:0043170_0.692|GO:0044249_0.682|GO:0009059_0.663|GO:0016740_0.647|GO:0070085_0.624|GO:0036065_0.617|GO:0016757_0.607|GO:0016758_0.606|GO:0008417_0.599|GO:0044238_0.582|GO:0005575_0.578|GO:0110165_0.569|GO:0019538_0.526|GO:1901135_0.502
|
IPR019378+49-384+|IPR045130+46-413+
|
— |
PF10250+49-384+GDP-fucose_protein_O-fucosyltransferase
|
— |
PTHR13398+46-413+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-414
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
47876.910
|
5.756
|
-5.500
|
28.261
|
16.425
|
48.551
|
51.449
|
14.251
|
14.010
|
46.135
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
323.892
|
373.359
|
404.634
|
250.323
|
209.834
|
239.550
|
303.448
|
341.998
|
532.028
|
221.825
|
354.769
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.714
|
-0.585
|
-0.286
|
— |
0.352
|
0.408
|
— | — | — | — | — | — |