Hg_chrom7_TN10mRNA_14296
Organism: Heterodera glycines Gene Locus: chr7:6201102-6202830 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.201 | 1.235 | 1.406 | 1.359 | 1.115 | 0.485 | 0.951 | 1.087 | 1.322 | 0.576 | 1.758 | 1.736 | 0.575 | 0.665 | 0.932 | 0.98 | 1.235 | 0.627 | 1.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13494
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.551
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.450
|
0.186
|
0.115
|
0.540
|
0.535
|
0.209
|
0.355
|
0.012
|
0.055
|
0.212
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011422
|
1.000
|
1.000
|
Hsc_gene_8385.t1
|
Hsc_gene_8384.t1;Hsc_gene_8384.t2;Hsc_gene_8385.t1
|
— |
Q9UHW5.2 GPN-loop GTPase 3 [Homo sapiens]
|
KAI1729331.1 ATP binding protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.902|GO:0110165_0.802|GO:0005622_0.700|GO:0008150_0.599|GO:0009987_0.554|GO:0005737_0.511
|
IPR004130+101-364_103-349+|IPR027417+100-361_102-349+|IPR030228+102-344+
|
— |
PF03029+103-349+Conserved_hypothetical_ATP_binding_protein
|
G3DSA:3.40.50.300:FF:000616+99-361+GPN-loop_GTPase_3
|
PTHR21231+101-364+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
357-368
|
1.000
|
1-356
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
42067.740
|
4.193
|
-25.500
|
23.913
|
13.587
|
45.924
|
54.076
|
8.967
|
14.946
|
49.185
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
green
|
2834.520
|
1901.922
|
2413.983
|
1597.592
|
1376.544
|
1191.040
|
1680.846
|
1645.744
|
4904.383
|
4294.859
|
4556.084
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.114
|
-0.389
|
-0.486
|
-0.247
|
-0.194
|
0.508
|
0.362
|
— | — |
-1.460
|
-1.468
|
— | — |
No JSON data available for plots.