Hg_chrom7_TN10mRNA_14300
Organism: Heterodera glycines Gene Locus: chr7:6213727-6214863 Feature type: polypeptideProtein Sequence
Length: 279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 0.834 | 0.782 | 0.618 | 1.075 | 1.195 | 0.469 | 1.254 | 0.637 | 1.744 | 0.489 | 0.843 | 1.693 | 0.896 | 1.244 | 1.485 | 0.94 | 1.358 | 1.103 | 0.527 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13497
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.668
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.113
|
0.948
|
0.051
|
0.228
|
0.019
|
0.081
|
0.051
|
0.016
|
0.023
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011423
|
1.000
|
1.000
|
Hsc_gene_8383.t1
|
Hsc_gene_8383.t1
|
— |
Q1LZ96.1 ATP synthase mitochondrial F1 complex assembly factor 2 [Bos taurus]
|
KAH7730639.1 ATP12 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043461
|
GO:0005575_0.909|GO:0110165_0.905|GO:0005622_0.824|GO:0016020_0.823|GO:0005737_0.797|GO:0043226_0.756|GO:0043227_0.738|GO:0043229_0.733|GO:0043231_0.728|GO:0008150_0.581|GO:0005739_0.557|GO:0009987_0.522
|
IPR011419+27-270_30-157+|IPR023335+97-269+|IPR042272+22-95+
|
— |
PF07542+30-157+ATP12_chaperone_protein
|
— |
PTHR21013+27-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-279
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
31313.780
|
6.381
|
-0.500
|
22.581
|
11.828
|
46.953
|
53.047
|
11.828
|
10.753
|
50.538
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
387.287
|
640.714
|
445.919
|
536.670
|
632.225
|
405.529
|
734.432
|
408.360
|
202.137
|
116.334
|
153.107
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.753
|
-0.393
|
0.376
|
0.204
|
-0.626
|
0.867
|
— |
0.990
|
— | — | — | — | — |
No JSON data available for plots.