SCN Proteipedia

Hg_chrom7_TN10mRNA_14301

Organism: Heterodera glycines Gene Locus: chr7:6215115-6220092 Feature type: polypeptide

Protein Sequence

Length: 1,230

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.04	0.718	0.961	0.421	1.26	1.001	0.697	0.854	1.608	1.241	0.936	1.961	0.7	1.266	1.311	0.616	0.946	1.047	0.876	0.837	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13498	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KRRS,RKKR,RRPKIAERQSQYQSRARKR	—	—	—	—	—	—	0.000	—	—	0.587	0.175	0.045	0.483	0.155	0.152	0.161	0.348	0.254	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011424	1.000	1.000	Hsc_gene_8382.t1	Hsc_gene_22422.t1;Hsc_gene_8382.t1	—	O75533.3 Splicing factor 3B subunit 1 [Homo sapiens]	KAI3413536.1 Splicing factor 3B subunit 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000245\|GO:0003729	GO:0008150_0.963\|GO:0005575_0.922\|GO:0009987_0.920\|GO:0110165_0.916\|GO:0016020_0.840\|GO:0005622_0.824\|GO:0008152_0.787\|GO:0044238_0.778\|GO:0044237_0.769\|GO:0043226_0.764\|GO:0009058_0.752\|GO:0003674_0.751\|GO:0043229_0.751\|GO:0043170_0.750\|GO:0044249_0.744\|GO:0009059_0.725\|GO:0006139_0.716\|GO:0043227_0.713\|GO:0010467_0.712\|GO:0034654_0.702\|GO:0090304_0.698\|GO:0141187_0.697\|GO:0016070_0.694\|GO:0032774_0.692\|GO:0043231_0.691\|GO:0006396_0.678\|GO:0016071_0.677\|GO:0006397_0.674\|GO:0000375_0.670\|GO:0000377_0.670\|GO:0000398_0.670\|GO:0008380_0.670\|GO:0005488_0.661\|GO:0032991_0.649\|GO:0005634_0.599\|GO:0140513_0.554\|GO:0030532_0.540\|GO:0120114_0.540\|GO:1990904_0.540\|GO:0065007_0.532\|GO:0050789_0.509	IPR011989+400-904_924-1063_1064-1208+\|IPR015016+220-366+\|IPR016024+457-1224+\|IPR021133+775-813+\|IPR038737+6-1230+	—	PF08920+220-366+Splicing_factor_3B_subunit_1\|PF22646+1012-1090+PPP2R1A-like_HEAT_repeat	G3DSA:1.25.10.10:FF:000066+753-1043+Splicing_factor_3B_subunit_1\|G3DSA:1.25.10.10:FF:000504+1057-1204+Splicing_factor_3B_subunit_1,_putative\|G3DSA:1.25.10.10:FF:000810+417-752+Splicing_factor_3B_subunit_1	PTHR12097+6-1230+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-410	1.000	411-1230	7evn_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.596	137630.270	7.145	7.500	27.154	8.211	44.228	55.772	14.309	12.846	47.967

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	darkturquoise	2835.166	4198.342	3556.028	3877.363	4053.179	3643.408	3274.412	2702.912	1798.092	1565.666	1665.277

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.469	-0.252	0.233	—	—	—	-0.536	0.419	—	—	—	—	—

No JSON data available for plots.

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