Hg_chrom7_TN10mRNA_14302
Organism: Heterodera glycines Gene Locus: chr7:6220274-6221865 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.839 | 1.598 | 0.937 | 0.711 | 1.203 | 1.234 | 0.573 | 1.203 | 1.527 | 1.486 | 0.937 | 0.809 | 1.241 | 0.727 | 0.912 | 1.031 | 1.239 | 0.729 | 0.529 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13499
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.791
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
19-40
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.528
|
0.169
|
0.021
|
0.638
|
0.303
|
0.343
|
0.314
|
0.126
|
0.235
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011425
|
1.000
|
1.000
|
Hsc_gene_8381.t1
|
Hsc_gene_8381.t1
|
— |
Q5I0K7.1 UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Rattus norvegicus]
|
KAI1724135.1 UDP-N-acetylglucosamine transferase subunit ALG13 like protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006488|GO:0016758
|
GO:0005575_0.882|GO:0110165_0.882|GO:0005622_0.859|GO:0005737_0.790|GO:0008150_0.762|GO:0009987_0.704|GO:0016020_0.636|GO:0043226_0.633|GO:0043229_0.615|GO:0043227_0.591|GO:0043231_0.578|GO:0071944_0.517|GO:0005886_0.509
|
IPR007235+122-277+|IPR039042+120-288+
|
— |
PF04101+122-277+Glycosyltransferase_family_28_C-terminal_domain
|
— |
PTHR12867+120-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46
|
1.000
|
47-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
32432.850
|
6.160
|
-1.500
|
25.430
|
8.591
|
51.890
|
48.110
|
13.058
|
12.371
|
49.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1243.473
|
1066.437
|
699.908
|
885.022
|
885.835
|
822.546
|
650.559
|
973.148
|
861.315
|
2550.413
|
1826.514
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.838
|
-0.406
|
0.448
|
— | — |
-0.330
|
— |
-0.439
|
— | — | — | — | — |
No JSON data available for plots.