SCN Proteipedia

Hg_chrom7_TN10mRNA_14304

Organism: Heterodera glycines Gene Locus: chr7:6223883-6228672 Feature type: polypeptide

Protein Sequence

Length: 1,159

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.923	1.224	1.067	0.565	0.935	1.239	0.966	1.467	1.074	1.318	0.601	0.711	1.702	0.813	1.461	1.011	0.693	0.85	0.929	0.711	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13501	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRKR,RRKR	—	—	32-57	0.996	—	—	0.486	—	—	0.123	0.024	0.004	0.251	0.186	0.403	0.331	0.042	0.843	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004606	1.000	2.000	Hsc_gene_8379.t1;Hsc_gene_8379.t2	Hsc_gene_8379.t1;Hsc_gene_8379.t2	—	Q03600.1 Integrin alpha ina-1 [Caenorhabditis elegans]	KAI1729325.1 integrin alpha domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007155\|GO:0008305	GO:0005575_0.914\|GO:0008150_0.908\|GO:0110165_0.908\|GO:0009987_0.856\|GO:0016020_0.814\|GO:0071944_0.805\|GO:0005886_0.795\|GO:0003674_0.664\|GO:0032501_0.652\|GO:0065007_0.637\|GO:0032502_0.629\|GO:0048856_0.629\|GO:0050789_0.581\|GO:0007275_0.574\|GO:0007155_0.543\|GO:0050794_0.505	IPR000413+263-275_334-354_411-435_482-503_509-528_1118-1137+\|IPR013517+341-381+\|IPR013519+47-94_327-390_337-393_398-458_408-466_468-530_478-533+\|IPR013649+515-671+\|IPR028994+33-516_33-518+\|IPR032695+683-828_834-1077+\|IPR048285+680-830+\|IPR048286+837-1097+	SM00191+47-94_337-393_408-466_478-533+	PF01839+341-381+FG-GAP_repeat\|PF08441+515-671+Integrin_alpha_Ig-like_domain_1\|PF20805+680-830+Integrin_alpha_Ig-like_domain_2\|PF20806+837-1097+Integrin_alpha_Ig-like_domain_3	—	PTHR23220+18-1144+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	945-995	2.000	1-944;996-1159	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	129639.320	7.234	13.000	25.539	12.683	46.937	53.063	14.064	11.475	49.957

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	1107.119	2381.136	1216.415	741.643	990.600	2062.066	1366.020	2078.156	523.773	387.303	445.790

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.198	-1.820	-0.605	0.386	1.073	-0.584	—	-0.463	—	—	—	—	—

No JSON data available for plots.

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