Hg_chrom7_TN10mRNA_14306
Organism: Heterodera glycines Gene Locus: chr7:6234729-6238103 Feature type: polypeptideProtein Sequence
Length: 804
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.244 | 0.701 | 0.901 | 1.119 | 1.435 | 0.518 | 1.43 | 1.41 | 1.513 | 0.791 | 1.097 | 1.658 | 0.718 | 1.015 | 1.51 | 0.775 | 0.735 | 1.148 | 0.402 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13503
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.303
|
0.345
|
0.064
|
0.613
|
0.322
|
0.585
|
0.446
|
0.034
|
0.191
|
0.093
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011428
|
1.000
|
1.000
|
Hsc_gene_8377.t1
|
Hsc_gene_8325.t1;Hsc_gene_8377.t1;Hsc_gene_8394.t1
|
— | — |
KAI1721255.1 type I inositol 3,4-bisphosphate 4-phosphatase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016316
|
GO:0008150_0.953|GO:0009987_0.895|GO:0005575_0.811|GO:0110165_0.811|GO:0065007_0.755|GO:0003674_0.635|GO:0005622_0.629|GO:0008152_0.626|GO:0044237_0.610|GO:0050789_0.603|GO:0050794_0.591|GO:0050896_0.581|GO:0051716_0.551|GO:0007154_0.510|GO:0023052_0.509
|
IPR039034+100-436+
|
— | — | — |
PTHR12187+100-436+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
802-804
|
1.000
|
1-801
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
90843.800
|
7.154
|
8.500
|
23.632
|
11.692
|
49.876
|
50.124
|
13.060
|
10.572
|
46.393
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1334.097
|
1293.350
|
1507.980
|
1394.513
|
1466.394
|
1774.255
|
2528.457
|
1912.900
|
615.904
|
920.553
|
789.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.290
|
0.521
|
— |
0.545
|
— | — | — | — | — |
No JSON data available for plots.