Hg_chrom7_TN10mRNA_14308
Organism: Heterodera glycines Gene Locus: chr7:6244828-6246557 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.856 | 0.659 | 0.567 | 0.684 | 0.992 | 1.235 | 1.079 | 1.133 | 1.385 | 1.608 | 0.558 | 0.667 | 0.787 | 0.654 | 2.255 | 1.659 | 0.557 | 0.858 | 0.654 | 0.25 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13505
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.862
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
30-51
|
0.959
|
— | — | — | — |
0.000
|
— | — |
0.261
|
0.020
|
0.005
|
0.184
|
0.168
|
0.296
|
0.459
|
0.017
|
0.698
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011430
|
1.000
|
1.000
|
Hsc_gene_8375.t1
|
Hsc_gene_8375.t1
|
— | — |
KAI1729337.1 sarcoglycan complex subunit protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007517|GO:0016012|GO:0016020
|
— |
IPR006875+84-343+|IPR027659+76-352+
|
— |
PF04790+84-343+Sarcoglycan_complex_subunit_protein
|
— |
PTHR21142+76-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-353
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.843
|
38783.490
|
11.018
|
24.000
|
26.062
|
6.799
|
48.725
|
51.275
|
16.997
|
9.065
|
48.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
283.757
|
1031.833
|
886.444
|
82.109
|
48.743
|
261.577
|
93.374
|
444.283
|
3.084
|
170.986
|
99.028
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.449
|
-3.788
|
-3.322
|
-0.784
|
2.438
|
-1.477
|
0.659
|
-2.108
|
-5.894
|
4.877
|
— | — | — |
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