Hg_chrom7_TN10mRNA_14309
Organism: Heterodera glycines Gene Locus: chr7:6246749-6248355 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 0.53 | 1.244 | 1.123 | 1.249 | 1.169 | 0.543 | 1.303 | 1.592 | 1.365 | 0.592 | 1.533 | 1.538 | 0.752 | 1.595 | 1.117 | 0.427 | 1.086 | 0.251 | 0.479 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.799
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
lysosome_vacuole
|
— |
KKIVCHGLSEAERVRRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.321
|
0.361
|
0.008
|
0.396
|
0.046
|
0.426
|
0.201
|
0.010
|
0.400
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011431
|
1.000
|
1.000
|
Hsc_gene_8374.t1
|
Hsc_gene_8374.t1
|
— |
P57760.2 Serine/threonine-protein kinase 16 [Rattus norvegicus]
|
KAI1721239.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.847|GO:0005575_0.801|GO:0110165_0.801|GO:0005622_0.734|GO:0009987_0.689|GO:0005737_0.653|GO:0065007_0.614|GO:0050789_0.600|GO:0016020_0.582|GO:0003674_0.524
|
IPR000719+17-292_17-300+|IPR008271+147-159+|IPR011009+9-292+|IPR052239+3-299+
|
SM00220+17-300+
|
PF00069+17-292+Protein_kinase_domain
|
— |
PTHR45998+3-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
303-307
|
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
34712.930
|
5.647
|
-4.000
|
28.664
|
10.098
|
45.928
|
54.072
|
14.332
|
14.332
|
46.254
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
454.534
|
425.512
|
546.952
|
460.689
|
424.621
|
411.127
|
634.406
|
678.727
|
296.386
|
423.034
|
368.756
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.138
|
— | — |
0.637
|
0.616
|
— | — | — | — | — | — |
No JSON data available for plots.