Hg_chrom7_TN10mRNA_14310
Organism: Heterodera glycines Gene Locus: chr7:6248654-6250770 Feature type: polypeptideProtein Sequence
Length: 553
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.421 | 1.009 | 1.019 | 0.249 | 1.025 | 0.881 | 0.818 | 1.718 | 1.286 | 1.588 | 0.658 | 1.489 | 2.21 | 1.078 | 1.255 | 1.007 | 0.593 | 0.877 | 1.252 | 1.064 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13507
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-18
|
0.925
|
1.000
|
0.000
|
0.000
|
0.213
|
0.232
|
0.067
|
0.271
|
0.901
|
0.277
|
0.489
|
0.214
|
0.228
|
0.382
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011432
|
1.000
|
1.000
|
Hsc_gene_8373.t1
|
Hsc_gene_8373.t1
|
— |
Q17FB8.1 Glycosyltransferase 25 family member [Aedes aegypti]
|
KAI1729339.1 glycosyltransferase family 25 (LPS biosynthesis protein) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0009987_0.893|GO:0005575_0.701|GO:0110165_0.695|GO:0003674_0.659|GO:0005622_0.642|GO:0016020_0.637|GO:0005737_0.601|GO:0043226_0.593|GO:0043229_0.588|GO:0043227_0.570|GO:0043231_0.559|GO:0071944_0.559|GO:0005886_0.553|GO:0071840_0.515|GO:0016043_0.510
|
IPR002654+290-457_291-456+|IPR050757+35-524+
|
— |
PF01755+290-457+Glycosyltransferase_family_25_(LPS_biosynthesis_protein)
|
— |
PTHR10730+35-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
552-553
|
1.000
|
1-551
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.670
|
63972.380
|
6.725
|
2.500
|
25.678
|
16.637
|
44.123
|
55.877
|
13.924
|
11.754
|
43.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1250.479
|
2168.207
|
1080.681
|
1255.220
|
1192.886
|
1263.457
|
1416.616
|
1686.922
|
862.115
|
1050.265
|
969.630
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.234
|
-0.926
|
0.325
|
-0.105
|
— |
0.175
|
0.313
|
— | — | — | — | — | — |