Hg_chrom7_TN10mRNA_14312
Organism: Heterodera glycines Gene Locus: chr7:6253022-6253822 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.279 | 1.524 | 0.413 | 1.597 | 1.228 | 0.855 | 1.497 | 0.798 | 1.133 | 0.726 | 1.409 | 1.164 | 1.267 | 1.1 | 0.257 | 0.785 | 1.361 | 0.461 | 1.585 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13509
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.112
|
0.410
|
0.025
|
0.109
|
0.951
|
0.070
|
0.202
|
0.068
|
0.088
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011434
|
1.000
|
1.000
|
Hsc_gene_8371.t1
|
Hsc_gene_8371.t1
|
— |
Q7YZW5.1 Protein vem-1 [Caenorhabditis elegans]
|
KAI1729345.1 cytochrome b5-like heme/Steroid binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.867|GO:0110165_0.862|GO:0008150_0.734|GO:0016020_0.695|GO:0003674_0.600|GO:0009987_0.598|GO:0005622_0.585|GO:0043226_0.567|GO:0071944_0.564|GO:0005737_0.554|GO:0005886_0.537|GO:0005488_0.521|GO:0043229_0.513
|
IPR001199+52-148_53-111+|IPR036400+43-148_45-149+|IPR050577+11-157+
|
SM01117+52-148+
|
PF00173+53-111+Cytochrome_b5-like_Heme/Steroid_binding_domain
|
G3DSA:3.10.120.10:FF:000003+45-149+membrane-associated_progesterone_receptor_component_1
|
PTHR10281+11-157+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-167
|
1.000
|
1-148
|
4x8y_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
18978.410
|
4.457
|
-10.500
|
31.138
|
13.174
|
43.713
|
56.287
|
13.174
|
17.964
|
47.904
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
1404.849
|
1879.751
|
1085.072
|
1055.790
|
1264.046
|
1415.722
|
1856.278
|
1559.566
|
1291.329
|
1384.134
|
1344.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.022
|
-0.969
|
— |
0.227
|
0.178
|
0.403
|
— |
0.395
|
— | — | — | — | — |
No JSON data available for plots.