Hg_chrom7_TN10mRNA_14313
Organism: Heterodera glycines Gene Locus: chr7:6254410-6255454 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.551 | 1.469 | 1.244 | 0.726 | 0.965 | 1.35 | 0.815 | 1.842 | 0.936 | 1.28 | 0.319 | 1.238 | 2.339 | 0.607 | 1.074 | 1.203 | 0.431 | 1.595 | 0.81 | 0.31 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13510
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
2-22
|
1.000
|
34-64
|
0.983
|
— | — |
0.000
|
— | — |
0.134
|
0.929
|
0.018
|
0.151
|
0.033
|
0.051
|
0.135
|
0.014
|
0.033
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011435
|
1.000
|
1.000
|
Hsc_gene_8370.t1
|
Hsc_gene_8370.t1
|
— |
Q17424.2 Probable thioredoxin-2 [Caenorhabditis elegans]
|
KAI1721210.1 thioredoxin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.850|GO:0110165_0.831|GO:0008150_0.751|GO:0005622_0.739|GO:0005737_0.734|GO:0016020_0.667|GO:0043226_0.608|GO:0003674_0.601|GO:0043229_0.583|GO:0043227_0.561|GO:0043231_0.555
|
IPR013766+66-180_79-175+|IPR017937+95-113+|IPR036249+73-178+
|
— |
PF00085+79-175+Thioredoxin
|
— |
PTHR45663+70-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
21398.140
|
4.830
|
-6.500
|
23.684
|
14.211
|
46.316
|
53.684
|
11.053
|
12.632
|
51.579
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
1097.091
|
417.594
|
628.559
|
865.323
|
970.537
|
802.297
|
1090.749
|
686.093
|
964.073
|
2028.785
|
1572.480
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.361
|
0.914
|
0.570
|
0.134
|
-0.260
|
0.454
|
-0.331
|
0.811
|
— | — | — | — | — |
No JSON data available for plots.