Hg_chrom7_TN10mRNA_14314
Organism: Heterodera glycines Gene Locus: chr7:6255535-6259091 Feature type: polypeptideProtein Sequence
Length: 594
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 0.783 | 1.102 | 0.755 | 1.235 | 0.734 | 0.561 | 1.852 | 1.122 | 1.502 | 0.842 | 0.792 | 1.496 | 0.874 | 1.134 | 1.419 | 0.718 | 0.791 | 1.036 | 1.139 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13511
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.638
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.332
|
0.181
|
0.022
|
0.734
|
0.117
|
0.209
|
0.172
|
0.009
|
0.123
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011436
|
1.000
|
1.000
|
Hsc_gene_8369.t1
|
Hsc_gene_8369.t1
|
— |
Q09647.3 Tubulin polyglutamylase ttll-4 [Caenorhabditis elegans]
|
KAI1729365.1 tubulin-tyrosine ligase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036211
|
GO:0008150_0.787|GO:0005575_0.779|GO:0110165_0.779|GO:0005622_0.740|GO:0003674_0.698|GO:0043226_0.577|GO:0016020_0.570|GO:0003824_0.554|GO:0140096_0.516|GO:0043229_0.504
|
IPR004344+104-438_155-429+
|
— |
PF03133+155-429+Tubulin-tyrosine_ligase_family
|
— |
PTHR12241+79-572+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
559-594
|
1.000
|
1-558
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.544
|
67669.730
|
6.282
|
-3.000
|
28.283
|
14.310
|
48.822
|
51.178
|
14.815
|
13.468
|
46.801
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightcyan
|
2010.958
|
2278.937
|
2325.342
|
2064.526
|
2574.030
|
2752.628
|
2061.086
|
2399.156
|
1231.748
|
1703.241
|
1501.173
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.200
|
-0.280
|
— |
0.286
|
0.112
|
-0.408
|
-0.304
|
— | — | — | — | — | — |
No JSON data available for plots.