Hg_chrom7_TN10mRNA_14317
Organism: Heterodera glycines Gene Locus: chr7:6269804-6276244 Feature type: polypeptideProtein Sequence
Length: 674
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.363 | 1.139 | 0.54 | 0.307 | 0.989 | 0.989 | 0.724 | 2.226 | 0.593 | 0.962 | 0.877 | 1.309 | 1.525 | 1.912 | 0.848 | 1.611 | 0.657 | 0.674 | 0.799 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13514
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRDKKPTPGGTKRKAQ,KKQQQLQMQMMAKRKKET,KRKKETEEAKKEEKTEGKAEEKRDKKPTPGGTKRK
|
— | — |
89-109
|
0.996
|
— | — |
0.000
|
— | — |
0.937
|
0.092
|
0.004
|
0.231
|
0.035
|
0.023
|
0.023
|
0.021
|
0.021
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004607
|
1.000
|
2.000
|
Hsc_gene_8366.t1;Hsc_gene_8366.t3
|
Hsc_gene_8366.t2
|
— |
Q19691.1 T-box protein 2 [Caenorhabditis elegans]
|
KAI1721204.1 t-box domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000978|GO:0003700|GO:0005634|GO:0006355|GO:0045893
|
GO:0008150_0.958|GO:0009987_0.795|GO:0032502_0.784|GO:0048856_0.767|GO:0005575_0.742|GO:0050789_0.735|GO:0065007_0.735|GO:0032501_0.734|GO:0110165_0.722|GO:0050794_0.717|GO:0007275_0.714|GO:0005622_0.678|GO:0043226_0.651|GO:0003674_0.644|GO:0016020_0.625|GO:0048731_0.625|GO:0043229_0.623|GO:0048513_0.617|GO:0008152_0.614|GO:0044237_0.607|GO:0005488_0.606|GO:0009058_0.606|GO:0043170_0.601|GO:0019222_0.597|GO:0044238_0.588|GO:0009059_0.586|GO:0031323_0.586|GO:0044249_0.586|GO:0010467_0.583|GO:0009653_0.582|GO:0060255_0.579|GO:0009889_0.563|GO:0010556_0.563|GO:0031326_0.563|GO:0043227_0.563|GO:0010468_0.561|GO:0080090_0.558|GO:0006139_0.554|GO:0016070_0.549|GO:0090304_0.549|GO:0034654_0.548|GO:0141187_0.541|GO:0032774_0.540|GO:0043231_0.536|GO:0019219_0.530|GO:0051252_0.524|GO:0006351_0.512|GO:2001141_0.507|GO:0006355_0.506|GO:0003676_0.503|GO:0097159_0.503
|
IPR001699+52-619+|IPR008967+183-364+|IPR018186+191-210_265-283+|IPR036960+178-370+|IPR046360+181-369_184-364_186-364_199-223_264-277_281-290_300-314_335-348_356-364+
|
SM00425+181-369+
|
PF00907+184-364+T-box
|
G3DSA:2.60.40.820:FF:000010+180-370+T-box_transcription_factor_TBX6
|
PTHR11267+52-619+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
354-674
|
1.000
|
1-353
|
1h6f_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
72796.940
|
9.081
|
22.000
|
23.294
|
12.018
|
47.329
|
52.671
|
14.392
|
8.902
|
56.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
736.364
|
1716.218
|
1316.638
|
692.757
|
293.819
|
186.427
|
249.745
|
305.767
|
1351.825
|
422.209
|
820.616
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
-1.446
|
-0.818
|
-1.270
|
-0.641
|
0.432
|
0.610
|
— | — | — | — | — | — |
No JSON data available for plots.