Hg_chrom7_TN10mRNA_14318
Organism: Heterodera glycines Gene Locus: chr7:6276535-6290798 Feature type: polypeptideProtein Sequence
Length: 3,249
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.324 | 0.823 | 0.945 | 0.985 | 1.31 | 0.509 | 1.554 | 1.313 | 1.597 | 0.62 | 1.448 | 1.205 | 0.805 | 1.036 | 1.561 | 0.928 | 0.783 | 0.805 | 0.498 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13515
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRQWQKRHKK,RKNETNVRRRKRKDL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.342
|
0.123
|
0.012
|
0.515
|
0.335
|
0.396
|
0.319
|
0.051
|
0.369
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002425
|
1.000
|
3.000
|
Hsc_gene_8348.t1;Hsc_gene_8359.t1;Hsc_gene_8365.t1
|
Hsc_gene_8348.t1;Hsc_gene_8359.t1;Hsc_gene_8364.t1;Hsc_gene_8365.t1
|
— |
O94915.2 Protein furry homolog-like [Homo sapiens]
|
KAI3413521.1 Sax-2p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000902
|
GO:0008150_0.972|GO:0065007_0.915|GO:0050789_0.904|GO:0003674_0.796|GO:0008152_0.746|GO:0019222_0.746|GO:0043170_0.745|GO:0048519_0.735|GO:0060255_0.728|GO:0044238_0.720|GO:0080090_0.720|GO:0005575_0.704|GO:0110165_0.700|GO:0019538_0.669|GO:0043412_0.644|GO:0036211_0.643|GO:0009987_0.637|GO:0051246_0.636|GO:0005622_0.635|GO:0031399_0.618|GO:0016020_0.607|GO:0050794_0.590|GO:0071944_0.546|GO:0032502_0.540|GO:0048856_0.540|GO:0005886_0.505|GO:0005737_0.493|GO:0005488_0.486|GO:0032501_0.472|GO:0016043_0.468|GO:0071840_0.468|GO:0048518_0.452|GO:0005515_0.446|GO:0007275_0.444|GO:0048522_0.441|GO:0031323_0.432|GO:0044237_0.432|GO:0009653_0.426|GO:0048731_0.422|GO:0048523_0.417|GO:0009058_0.415|GO:0009059_0.415|GO:0044249_0.415|GO:0010467_0.413|GO:0048869_0.410|GO:0030154_0.409|GO:0009889_0.405|GO:0031326_0.405|GO:0048468_0.403|GO:0050793_0.399|GO:0010556_0.398|GO:0009893_0.396|GO:0010468_0.396|GO:0000902_0.394|GO:0007399_0.393|GO:0006139_0.392|GO:0090304_0.388|GO:0016070_0.385|GO:0022008_0.385|GO:0034654_0.383|GO:0141187_0.383|GO:0031325_0.379|GO:0010604_0.377|GO:0032774_0.377|GO:0048513_0.377|GO:0009891_0.374|GO:0006996_0.372|GO:0048699_0.371|GO:0019219_0.370|GO:0022414_0.370|GO:0031328_0.367|GO:0051252_0.365|GO:0030182_0.363|GO:0010557_0.362|GO:0022603_0.362|GO:0006351_0.360|GO:0003824_0.358|GO:0051128_0.357|GO:0048666_0.356|GO:0006355_0.354|GO:0022604_0.354|GO:0030030_0.354|GO:0120036_0.354|GO:2001141_0.354
|
IPR016024+574-1027_1186-1716+|IPR025481+1996-2255+|IPR025614+113-649+|IPR039867+17-3198+|IPR045842+2826-3062+
|
— |
PF14222+113-649+Cell_morphogenesis_N-terminal|PF14225+1996-2255+Cell_morphogenesis_C-terminal|PF19421+2826-3062+Furry_protein_C-terminal
|
— |
PTHR12295+17-3198+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
665-709;2349-2814
|
3.000
|
1-664;710-2348;2815-3249
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
363424.320
|
6.654
|
9.500
|
22.715
|
10.188
|
50.108
|
49.892
|
12.281
|
10.434
|
49.431
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
4724.032
|
8519.164
|
3465.738
|
2726.072
|
2303.418
|
2183.952
|
3530.368
|
2326.659
|
3621.054
|
8556.086
|
6441.073
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.528
|
-1.781
|
-0.237
|
-0.274
|
— |
0.702
|
— |
0.743
|
-1.357
|
— |
-1.609
|
— | — |
No JSON data available for plots.