Hg_chrom7_TN10mRNA_14323
Organism: Heterodera glycines Gene Locus: chr7:6301715-6304672 Feature type: polypeptideProtein Sequence
Length: 711
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.374 | 1.1 | 0.727 | 1.5 | 0.866 | 0.703 | 0.774 | 0.938 | 1.121 | 1.108 | 0.745 | 1.485 | 0.866 | 1.292 | 0.904 | 0.83 | 0.81 | 1.623 | 1.034 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13519
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRKAVDALLRFKWRPR,KREMLKVSKEIIEQRKKAL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.662
|
0.055
|
0.003
|
0.513
|
0.104
|
0.037
|
0.028
|
0.001
|
0.207
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011440
|
1.000
|
1.000
|
Hsc_gene_8360.t1
|
Hsc_gene_8360.t1
|
— |
Q9XWI6.2 Eukaryotic translation initiation factor 3 subunit B [Caenorhabditis elegans]
|
KAF7636894.1 Eukaryotic translation initiation factor 3 subunit B [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0003743|GO:0005515|GO:0005852|GO:0006413|GO:0031369
|
GO:0008150_0.833|GO:0009987_0.781|GO:0005575_0.695|GO:0110165_0.695|GO:0005622_0.556|GO:0043226_0.522
|
IPR011400+1-708_9-705+|IPR012677+45-126+|IPR013979+395-599+|IPR015943+165-304_352-613+|IPR034363+47-127+|IPR035979+41-121+
|
— |
PF08662+395-599+Eukaryotic_translation_initiation_factor_eIF2A
|
— |
PTHR14068+9-705+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;693-711
|
1.000
|
19-692
|
2nlw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
81662.950
|
5.921
|
-4.500
|
30.239
|
12.518
|
50.914
|
49.086
|
15.190
|
15.049
|
47.679
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
midnightblue
|
2429.209
|
2008.581
|
2082.079
|
3994.295
|
4734.544
|
3770.903
|
3084.614
|
1586.559
|
2059.348
|
1110.188
|
1516.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.177
|
0.855
|
1.048
|
0.213
|
-0.313
|
-0.280
|
-1.354
|
1.102
|
— | — | — | — | — |
No JSON data available for plots.