Hg_chrom7_TN10mRNA_14325
Organism: Heterodera glycines Gene Locus: chr7:6304749-6310918 Feature type: polypeptideProtein Sequence
Length: 1,166
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.157 | 0.982 | 0.562 | 1.715 | 1.1 | 0.623 | 1.329 | 1.105 | 1.252 | 0.923 | 2.018 | 0.762 | 0.544 | 1.295 | 1.372 | 0.815 | 0.975 | 0.858 | 0.404 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13520
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRKL,KRRRR,RKSHLSSPTNSKKNRT,KRAKKHEEELAQRRSKS,KKNRTYDIDMDLINEKRKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.314
|
0.231
|
0.011
|
0.574
|
0.144
|
0.346
|
0.444
|
0.010
|
0.307
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000437
|
4.000
|
4.000
|
Hsc_gene_8347.t1;Hsc_gene_8347.t2;Hsc_gene_8347.t3;Hsc_gene_8347.t4
|
Hsc_gene_8347.t1;Hsc_gene_8347.t2;Hsc_gene_8347.t3;Hsc_gene_8347.t4
|
— |
P34609.4 JNK-interacting protein [Caenorhabditis elegans]
|
KAI1729398.1 JNKSAPK-associated protein-1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005078
|
GO:0008150_0.964|GO:0009987_0.925|GO:0065007_0.875|GO:0005575_0.872|GO:0110165_0.872|GO:0050789_0.850|GO:0050794_0.833|GO:0005622_0.831|GO:0003674_0.705|GO:0005737_0.700|GO:0016020_0.695|GO:0005488_0.670|GO:0005515_0.638|GO:0051179_0.591|GO:0032501_0.590|GO:0006810_0.577|GO:0051234_0.577|GO:0050896_0.555|GO:0005886_0.541|GO:0071944_0.541|GO:0051716_0.531|GO:0051641_0.530|GO:0043226_0.507|GO:0051649_0.503
|
IPR011047+821-1079+|IPR032486+333-403+|IPR034743+13-101_30-92+|IPR034744+425-495+|IPR039911+19-728+
|
— |
PF09744+30-92+RILP_homology_1_domain|PF16471+333-403+JNK-interacting_protein_leucine_zipper_II|PF19056+817-1021+WD40_repeated_domain
|
G3DSA:1.20.5.1000:FF:000001+330-405+C-Jun-amino-terminal_kinase-interacting_protein_3_isoform_X2
|
PTHR13886+19-728+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;184-327;393-570;1161-1166
|
3.000
|
4-183;328-392;571-1160
|
8ptk_x
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
131426.310
|
5.329
|
-22.500
|
30.789
|
7.890
|
54.631
|
45.369
|
15.094
|
15.695
|
47.427
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2533.946
|
4353.727
|
3868.504
|
2124.313
|
1854.690
|
2040.891
|
2319.491
|
3101.654
|
3329.385
|
1215.249
|
2121.307
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.400
|
-1.172
|
-0.757
|
-0.227
|
0.152
|
0.196
|
0.499
|
-0.276
|
— | — | — | — | — |
No JSON data available for plots.