SCN Proteipedia

Hg_chrom7_TN10mRNA_14326

Organism: Heterodera glycines Gene Locus: chr7:6304749-6310918 Feature type: polypeptide

Protein Sequence

Length: 1,197

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.709	1.166	0.972	0.547	1.74	1.071	0.617	1.337	1.095	1.242	0.962	2.064	0.743	0.562	1.279	1.396	0.835	0.962	0.835	0.393	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13520	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRKL,KRRRR,RKSHLSSPTNSKKNRT,KRAKKHEEELAQRRSKS,KKNRTYDIDMDLINEKRKA	—	—	—	—	—	—	0.000	—	—	0.314	0.232	0.012	0.580	0.143	0.341	0.443	0.009	0.309	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000437	4.000	4.000	Hsc_gene_8347.t1;Hsc_gene_8347.t2;Hsc_gene_8347.t3;Hsc_gene_8347.t4	Hsc_gene_8347.t1;Hsc_gene_8347.t2;Hsc_gene_8347.t3;Hsc_gene_8347.t4	—	P34609.4 JNK-interacting protein [Caenorhabditis elegans]	KAI1729398.1 JNKSAPK-associated protein-1 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005078	GO:0008150_0.964\|GO:0009987_0.924\|GO:0065007_0.876\|GO:0005575_0.874\|GO:0110165_0.874\|GO:0050789_0.851\|GO:0050794_0.834\|GO:0005622_0.832\|GO:0003674_0.704\|GO:0005737_0.701\|GO:0016020_0.692\|GO:0005488_0.669\|GO:0005515_0.639\|GO:0032501_0.590\|GO:0051179_0.586\|GO:0006810_0.573\|GO:0051234_0.573\|GO:0050896_0.559\|GO:0005886_0.538\|GO:0071944_0.538\|GO:0051716_0.535\|GO:0051641_0.529\|GO:0043226_0.505	IPR011047+852-1110+\|IPR032486+315-385+\|IPR034743+13-101_30-92+\|IPR034744+407-477+\|IPR039911+19-1181+	—	PF09744+30-92+RILP_homology_1_domain\|PF16471+315-385+JNK-interacting_protein_leucine_zipper_II\|PF19056+848-1052+WD40_repeated_domain	G3DSA:1.20.5.1000:FF:000001+312-387+C-Jun-amino-terminal_kinase-interacting_protein_3_isoform_X2	PTHR13886+19-1181+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3;184-333;374-552;735-803;1192-1197	4.000	4-183;334-373;553-734;804-1191	8ptk_x	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.494	134969.290	5.381	-22.000	31.078	7.769	55.138	44.862	15.288	15.789	47.368

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	2533.946	4353.727	3868.504	2124.313	1854.690	2040.891	2319.491	3101.654	3329.385	1215.249	2121.307

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.400	-1.172	-0.757	-0.227	0.152	0.196	0.499	-0.276	—	—	—	—	—

No JSON data available for plots.

Back to Browser