Hg_chrom7_TN10mRNA_14328
Organism: Heterodera glycines Gene Locus: chr7:6313232-6314343 Feature type: polypeptideProtein Sequence
Length: 244
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.144 | 1.565 | 0.565 | 1.708 | 0.946 | 0.39 | 0.615 | 1.002 | 1.551 | 1.428 | 1.929 | 0.683 | 0.394 | 1.338 | 0.703 | 0.336 | 0.869 | 0.631 | 1.326 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13521
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.491
|
0.393
|
0.037
|
0.723
|
0.072
|
0.184
|
0.114
|
0.018
|
0.221
|
0.186
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011441
|
1.000
|
1.000
|
Hsc_gene_19666.t1
|
Hsc_gene_19666.t1;Hsc_gene_8346.t1;Hsc_gene_8361.t1
|
— |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
KAH7729025.1 14-3-3 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.915|GO:0005575_0.865|GO:0110165_0.860|GO:0009987_0.822|GO:0005622_0.773|GO:0003674_0.711|GO:0005737_0.708|GO:0005488_0.665|GO:0065007_0.651|GO:0050789_0.643|GO:0043226_0.634|GO:0050794_0.598|GO:0016020_0.595|GO:0005515_0.587|GO:0051179_0.585|GO:0043227_0.532|GO:0050896_0.516
|
IPR000308+1-237_5-225_37-66_84-108_114-136_172-198+|IPR023410+5-236_12-223+|IPR036815+1-235_4-225+
|
SM00101+5-236+
|
PF00244+12-223+14-3-3_protein
|
— |
PTHR18860+5-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
208-244
|
1.000
|
1-207
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
28342.320
|
5.031
|
-5.500
|
36.066
|
9.016
|
51.639
|
48.361
|
17.213
|
18.852
|
41.803
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
642.060
|
79.183
|
229.583
|
233.334
|
416.251
|
1068.954
|
1229.576
|
731.343
|
123.037
|
1221.152
|
750.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.304
|
1.421
|
— |
0.804
|
1.375
|
— |
-0.661
|
0.897
|
— | — | — | — | — |
No JSON data available for plots.