SCN Proteipedia

Hg_chrom7_TN10mRNA_14332

Organism: Heterodera glycines Gene Locus: chr7:6322721-6324345 Feature type: polypeptide

Protein Sequence

Length: 323

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.792	1.008	0.675	0.641	0.877	1.429	0.663	2.012	1.238	1.171	1.173	0.911	1.72	1.488	0.948	1.194	0.761	0.751	1.429	0.273	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13525	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.865

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKQMKADESICPPQRKKP,RKQMKADESICPPQRKKPS	—	—	—	—	—	—	0.000	—	—	0.869	0.208	0.058	0.301	0.007	0.024	0.056	0.037	0.046	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011445	1.000	1.000	Hsc_gene_8342.t1	Hsc_gene_8342.t1	—	Q9U221.1 Uracil-DNA glycosylase [Caenorhabditis elegans]	KAH7731440.1 uracil-DNA glycosylase [Aphelenchus avenae]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004844\|GO:0006281\|GO:0006284\|GO:0016799	GO:0003674_0.848\|GO:0008150_0.812\|GO:0005575_0.773\|GO:0110165_0.773\|GO:0009987_0.755\|GO:0005622_0.714\|GO:0016020_0.711\|GO:0003824_0.701\|GO:0016787_0.677\|GO:0043226_0.672\|GO:0050896_0.663\|GO:0043229_0.656\|GO:0140640_0.656\|GO:0008152_0.655\|GO:0016798_0.654\|GO:0004844_0.650\|GO:0016799_0.650\|GO:0019104_0.650\|GO:0097506_0.650\|GO:0140097_0.650\|GO:0044238_0.645\|GO:0051716_0.637\|GO:0043170_0.632\|GO:0043227_0.630\|GO:0043231_0.630\|GO:0006139_0.604\|GO:0006950_0.593\|GO:0090304_0.588\|GO:0033554_0.568\|GO:0005737_0.559\|GO:0006259_0.550\|GO:0006974_0.550\|GO:0006281_0.543	IPR002043+28-322_104-321_105-314_119-320+\|IPR005122+149-310_155-311+\|IPR018085+157-166+\|IPR036895+97-322_102-321+	SM00986+149-310+\|SM00987+149-310+	PF03167+155-311+Uracil_DNA_glycosylase_superfamily	G3DSA:3.40.470.10:FF:000001+99-323+Uracil-DNA_glycosylase	PTHR11264+28-322+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-107	1.000	108-323	3tr7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.909	36330.710	9.930	17.500	25.387	13.003	48.297	51.703	16.409	8.978	47.988

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkorange	609.832	848.162	547.492	609.509	598.816	496.720	1664.941	625.835	348.502	384.837	369.265

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.862	-0.614	0.264	—	-0.255	1.756	—	1.554	—	—	—	—	—

No JSON data available for plots.

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