Hg_chrom7_TN10mRNA_14334
Organism: Heterodera glycines Gene Locus: chr7:6329908-6335245 Feature type: polypeptideProtein Sequence
Length: 1,117
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.874 | 1.124 | 0.96 | 1.42 | 1.865 | 1.171 | 0.671 | 2.551 | 0.895 | 1.113 | 0.977 | 0.895 | 0.671 | 0.844 | 1.498 | 0.882 | 0.748 | 0.543 | 1.033 | 0.5 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13527
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRRLLHLLEKHLKK,KRLSNITIADESRRAKCR,KRKIEHGDSTEEETALKRR,RKIEHGDSTEEETALKRRR,RRAKCRGCAQTISKKRRLL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.832
|
0.064
|
0.011
|
0.299
|
0.026
|
0.048
|
0.037
|
0.019
|
0.065
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011447
|
1.000
|
1.000
|
Hsc_gene_8340.t1
|
Hsc_gene_8340.t1
|
— | — |
KAH7731442.1 zinc finger protein [Aphelenchus avenae]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+231-253_260-284_446-470_521-543_550-574_720-743_722-743_749-773_836-857_865-889_959-982_1030-1052_1058-1082+|IPR050688+829-1084+
|
SM00355+231-253_260-284_446-470_521-543_550-574_720-743_749-773_836-857_865-889_959-982_1030-1052_1058-1082+
|
— | — |
PTHR24403+829-1084+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
70-225;304-425;610-692
|
4.000
|
1-69;226-303;426-609;693-1117
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
127295.380
|
6.460
|
-1.500
|
35.363
|
10.564
|
55.506
|
44.494
|
18.890
|
16.473
|
46.106
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2382.686
|
4569.010
|
3536.280
|
1967.283
|
1966.428
|
2273.436
|
2145.314
|
2501.272
|
2196.734
|
1667.070
|
1894.069
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.599
|
-1.353
|
-0.737
|
— |
0.223
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.