Hg_chrom7_TN10mRNA_14335
Organism: Heterodera glycines Gene Locus: chr7:6336872-6338130 Feature type: polypeptideProtein Sequence
Length: 276
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.463 | 0.843 | 0.922 | 0.625 | 0.785 | 0.836 | 0.604 | 1.087 | 1.288 | 1.518 | 0.933 | 1.066 | 1.711 | 1.185 | 1.627 | 1.087 | 0.772 | 1.263 | 2.23 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13528
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.814
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
KRRK,RRKR
|
9-55
|
0.948
|
3-23
|
1.000
|
— | — |
0.000
|
— | — |
0.244
|
0.680
|
0.251
|
0.283
|
0.420
|
0.146
|
0.220
|
0.026
|
0.127
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011448
|
1.000
|
1.000
|
Hsc_gene_8339.t1
|
Hsc_gene_8339.t1
|
— |
F1QCP6.1 Tafazzin [Danio rerio]
|
KAF7639896.1 Tafazzin family protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006644|GO:0016746
|
GO:0008150_0.933|GO:0009987_0.738|GO:0005575_0.679|GO:0110165_0.679|GO:0008152_0.645|GO:0044238_0.624|GO:0016020_0.620|GO:0044237_0.617|GO:0003674_0.594|GO:0032501_0.591|GO:0006793_0.563|GO:0006796_0.563|GO:0032502_0.562|GO:0048856_0.562|GO:0006629_0.555|GO:0019637_0.554|GO:0007275_0.551|GO:0044255_0.548|GO:0006644_0.542|GO:0046486_0.542|GO:0006650_0.541|GO:0005622_0.517|GO:0071840_0.513|GO:0005737_0.508|GO:0016043_0.506
|
IPR000872+26-274_85-104_117-128_131-146_183-204_221-234+|IPR002123+81-205_85-208+
|
SM00563+85-208+
|
PF01553+81-205+Acyltransferase
|
— |
PTHR12497+26-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-276
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
31829.100
|
10.238
|
15.000
|
26.087
|
12.681
|
45.290
|
54.710
|
16.304
|
9.783
|
46.377
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
958.984
|
1528.832
|
756.643
|
746.858
|
799.032
|
988.531
|
826.152
|
1365.665
|
658.801
|
1072.061
|
894.949
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.245
|
-1.171
|
— | — |
0.322
|
-0.249
|
0.362
|
-0.583
|
— | — | — | — | — |
No JSON data available for plots.