Hg_chrom7_TN10mRNA_14336
Organism: Heterodera glycines Gene Locus: chr7:6343492-6347193 Feature type: polypeptideProtein Sequence
Length: 636
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.335 | 1.609 | 0.457 | 1.247 | 0.445 | 2.58 | 1.104 | 1.651 | 0.454 | 0.722 | 0.405 | 1.202 | 0.961 | 1.33 | 0.963 | 1.797 | 0.644 | 0.667 | 0.121 | 0.555 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13529
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.638
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.913
|
0.136
|
0.012
|
0.199
|
0.034
|
0.030
|
0.034
|
0.028
|
0.039
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011449
|
1.000
|
1.000
|
Hsc_gene_8338.t1
|
Hsc_gene_8338.t1
|
— | — |
EPB80075.1 CXXC zinc finger domain protein [Ancylostoma ceylanicum]
|
No
|
0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0008270
|
GO:0008150_0.968|GO:0003674_0.834|GO:0009987_0.787|GO:0005575_0.782|GO:0110165_0.780|GO:0005488_0.699|GO:0005622_0.693|GO:0008152_0.639|GO:0043170_0.639|GO:0003676_0.620|GO:0097159_0.620|GO:0003677_0.579|GO:0043565_0.579|GO:0016043_0.554|GO:0071840_0.554|GO:0043226_0.553|GO:0044238_0.552|GO:0043229_0.538|GO:0065007_0.534|GO:0050789_0.531|GO:0050794_0.525|GO:0016020_0.516|GO:0009058_0.505|GO:0009059_0.505|GO:0010467_0.505|GO:0044237_0.505|GO:0044249_0.505
|
IPR002857+229-276_231-275_289-344+
|
— |
PF02008+231-275+CXXC_zinc_finger_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-131;174-224;354-512;574-636
|
3.000
|
132-173;225-353;513-573
|
4pzi_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
66895.820
|
8.596
|
24.500
|
15.881
|
8.805
|
49.371
|
50.629
|
10.692
|
5.189
|
61.635
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
1029.798
|
1247.904
|
750.775
|
1620.306
|
2124.935
|
2499.086
|
1571.086
|
1115.322
|
173.403
|
276.782
|
232.476
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.962
|
0.240
|
1.218
|
0.359
|
— |
-0.662
|
-1.270
|
0.635
|
— | — |
3.057
|
— | — |
No JSON data available for plots.