Hg_chrom7_TN10mRNA_14337
Organism: Heterodera glycines Gene Locus: chr7:6347624-6349793 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.718 | 1.167 | 1.123 | 0.732 | 1.094 | 1.238 | 0.506 | 1.255 | 1.33 | 1.278 | 0.965 | 1.59 | 1.716 | 0.854 | 1.3 | 1.048 | 0.886 | 0.848 | 0.594 | 0.511 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13530
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
55-88
|
0.993
|
— | — |
0.000
|
— | — |
0.119
|
0.955
|
0.013
|
0.186
|
0.026
|
0.031
|
0.025
|
0.012
|
0.045
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011450
|
1.000
|
1.000
|
Hsc_gene_8337.t1
|
Hsc_gene_8337.t1
|
— |
Q99JT1.1 Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [Mus musculus]
|
KHN81246.1 Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0016874|GO:0016884
|
GO:0005575_0.902|GO:0110165_0.897|GO:0016020_0.803|GO:0005622_0.761|GO:0043226_0.701|GO:0043229_0.694|GO:0005737_0.677|GO:0043227_0.672|GO:0043231_0.640|GO:0008150_0.511
|
IPR004413+32-513_33-512+|IPR006075+36-323+|IPR014746+36-328+|IPR017958+180-194+|IPR017959+35-512+|IPR018027+404-511+
|
— |
PF02637+404-511+GatB_domain|PF02934+36-323+GatB/GatE_catalytic_domain
|
— |
PTHR11659+35-512+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
501-518
|
1.000
|
1-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
59152.680
|
7.437
|
6.500
|
27.992
|
11.197
|
50.579
|
49.421
|
15.251
|
12.741
|
46.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
964.870
|
795.923
|
634.663
|
695.396
|
877.488
|
1017.636
|
1365.570
|
1073.392
|
568.980
|
1372.043
|
1027.873
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.556
|
-0.332
|
0.241
|
0.304
|
0.228
|
0.434
|
— |
0.491
|
— | — | — | — | — |
No JSON data available for plots.