SCN Proteipedia

Hg_chrom7_TN10mRNA_14339

Organism: Heterodera glycines Gene Locus: chr7:6352697-6357580 Feature type: polypeptide

Protein Sequence

Length: 1,287

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.623	1.355	1.257	0.616	1.295	1.076	0.546	1.01	1.088	1.523	1.118	1.6	1.511	0.792	1.142	0.988	0.56	0.93	0.956	0.708	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13532	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.893

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	PKPS,RRRR,RRGADIKVIMERDKLK,RKLMLSIKGRESKRFTK,KRPDEPIFEHILEDRKPER	—	—	—	—	—	—	0.000	—	—	0.230	0.081	0.024	0.654	0.097	0.425	0.232	0.016	0.424	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011452	1.000	1.000	Hsc_gene_8335.t1	Hsc_gene_8334.t1;Hsc_gene_8335.t1	—	P34268.2 Protein flightless-1 homolog [Caenorhabditis elegans]	KAI1729403.1 gelsolin repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0051015	GO:0005575_0.812\|GO:0110165_0.805\|GO:0008150_0.767\|GO:0005622_0.721\|GO:0009987_0.712\|GO:0043226_0.645\|GO:0043229_0.599\|GO:0016020_0.584\|GO:0071840_0.558\|GO:0016043_0.553\|GO:0003674_0.516	IPR001611+136-190_156-178_203-262_228-250_251-272_274-295_274-333+\|IPR003591+59-82_107-130_135-153_154-176_177-200_226-248_249-269_272-295_320-343_344-366+\|IPR007122+454-1276_510-608_529-545_555-573_631-722_643-663_708-727_741-840_769-791_903-1040_1059-1161_1175-1271+\|IPR007123+529-602_642-716_769-833_1188-1241+\|IPR029006+500-631_632-729_738-844_895-1059_1060-1166_1171-1286+\|IPR032675+4-197_198-407+\|IPR036180+636-737+	SM00262+510-608_631-722_741-840_903-1040_1059-1161_1175-1271+\|SM00364+107-126_154-173_226-245_274-291_295-316_343-362+\|SM00365+59-77_107-129_177-198_249-270_295-315_320-342+\|SM00369+59-82_107-130_135-153_154-176_177-200_226-248_249-269_272-295_320-343_344-366+	PF00626+529-602_642-716_769-833_1188-1241+Gelsolin_repeat\|PF13855+136-190_203-262_274-333+Leucine_rich_repeat	G3DSA:3.40.20.10:FF:000031+625-733+protein_flightless-1_homolog_isoform_X1\|G3DSA:3.40.20.10:FF:000034+892-1063+protein_flightless-1_homolog_isoform_X1	PTHR11977+454-1276+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1283-1287	1.000	1-1282	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.549	147926.060	5.974	-9.000	29.681	11.111	50.039	49.961	14.996	14.685	45.066

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	2601.823	3051.602	2310.387	2132.892	2177.487	2529.105	2894.343	3006.400	1362.139	3573.041	2625.512

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.631	-0.654	—	—	0.231	0.204	—	—	—	—	—	—	—

No JSON data available for plots.

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