Hg_chrom7_TN10mRNA_14341
Organism: Heterodera glycines Gene Locus: chr7:6359912-6362405 Feature type: polypeptideProtein Sequence
Length: 494
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.588 | 1.036 | 1.435 | 0.419 | 1.518 | 1.869 | 0.506 | 1.113 | 1.125 | 1.094 | 1.319 | 1.667 | 1.518 | 0.701 | 1.198 | 0.868 | 0.631 | 0.828 | 0.467 | 0.834 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13534
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_8332
|
— |
2-pJ2_J3_J4_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
RRYRLSKEGKAKADKKRQN,RKQRVIEEEDPDRQKRLER,RQKRLERLEQKRDAKQKQPKMKQFKIK
|
— | — | — | — |
1-17
|
0.999
|
1.000
|
0.000
|
0.000
|
0.348
|
0.130
|
0.032
|
0.153
|
0.952
|
0.080
|
0.357
|
0.042
|
0.106
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011454
|
1.000
|
1.000
|
Hsc_gene_8332.t1
|
Hsc_gene_8332.t1
|
— |
Q6AZI2.1 PAT complex subunit CCDC47 [Xenopus laevis]
|
KAI3413515.1 Protein of unknown function (DUF1682) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005783|GO:0032469
|
GO:0005575_0.946|GO:0110165_0.946|GO:0016020_0.895|GO:0005622_0.879|GO:0043226_0.861|GO:0008150_0.841|GO:0043229_0.836|GO:0009987_0.808|GO:0005886_0.803|GO:0071944_0.803|GO:0043227_0.784|GO:0043231_0.769|GO:0005737_0.760|GO:0071840_0.690|GO:0016043_0.677|GO:0005773_0.645|GO:0012505_0.642|GO:0006996_0.616|GO:0005783_0.576|GO:0003674_0.569|GO:0010256_0.567|GO:0007029_0.559|GO:0005488_0.530|GO:0032501_0.517|GO:0032991_0.515|GO:0050896_0.506
|
IPR012879+1-492_158-482+
|
— |
PF07946+158-482+PAT_complex_subunit_CCDC47
|
— |
PTHR12883+1-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-147;422-494
|
1.000
|
148-421
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
57549.980
|
5.587
|
-6.500
|
33.806
|
11.134
|
55.466
|
44.534
|
16.802
|
17.004
|
41.903
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
1660.963
|
931.189
|
1340.634
|
1469.798
|
1816.190
|
1908.186
|
1722.706
|
1410.023
|
2732.258
|
1242.996
|
1881.251
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.297
|
0.521
|
0.241
|
0.273
|
— | — |
-0.541
|
0.431
|
— | — | — | — | — |