SCN Proteipedia

Hg_chrom7_TN10mRNA_14342

Organism: Heterodera glycines Gene Locus: chr7:6364468-6382504 Feature type: polypeptide

Protein Sequence

Length: 4,041 (Signal peptide: 1-21)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.771	0.944	0.949	0.427	1.142	0.958	0.683	1.114	1.166	1.522	0.559	0.99	1.691	1.223	1.364	1.63	0.609	0.967	0.857	0.197	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13535	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-J4_Female	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	chloroplast	RFKKRKR,FKKRKRKESAKRN,RKEEGTSLKRKKKVA,RREEYQVIIRLMDAKPPKK	—	—	18-55	0.984	1-21	0.988	0.707	1.000	1.000	0.210	0.085	0.025	0.347	0.161	0.171	0.284	0.040	0.731	0.237

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004608	1.000	2.000	Hsc_gene_8331.t1;Hsc_gene_8331.t2	Hsc_gene_8328.t1;Hsc_gene_8330.t1;Hsc_gene_8331.t1;Hsc_gene_8331.t2	—	O14917.2 Protocadherin-17 [Homo sapiens]	KAI3413500.1 Protocadherin-16 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005886\|GO:0007155\|GO:0007156\|GO:0016020	GO:0008150_0.859\|GO:0005575_0.799\|GO:0110165_0.799\|GO:0016020_0.694\|GO:0032502_0.647\|GO:0009987_0.643\|GO:0048856_0.632\|GO:0032501_0.631\|GO:0007275_0.591\|GO:0005622_0.581\|GO:0065007_0.560\|GO:0050789_0.554\|GO:0048731_0.553\|GO:0050794_0.518	IPR001791+3411-3621_3420-3590_3439-3591+\|IPR002126+18-146_68-87_71-148_148-177_149-265_170-263_244-263_263-276_266-386_290-377_646-750_667-748_698-724_732-749_752-861_773-859_1737-1811_1737-1834_1748-1832_1835-1939_1841-1929_1856-1937_1940-2060_2362-2479_2396-2477_2479-2588_2490-2572_2500-2582+\|IPR013320+3414-3594+\|IPR015919+136-279_253-371_641-753_738-858_1716-1812_1822-1945_1934-2048_2472-2572+\|IPR020894+136-146_253-263_2467-2477+\|IPR050174+2212-2900+	SM00112+18-146_170-263_290-377_667-748_773-859_1748-1832_1856-1937_2396-2477_2500-2582+	PF00028+1737-1811_1841-1929_2490-2572+Cadherin_domain\|PF02210+3439-3591+Laminin_G_domain	—	PTHR24028+2212-2900+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	286-447;1309-1451;2210-2268;4035-4041	4.000	1-285;448-1308;1452-2209;2269-4034	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.759	448414.050	6.085	-24.000	24.672	10.097	47.587	52.413	12.596	12.076	50.755

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	greenyellow	2813.124	1367.379	1695.692	1256.828	1409.775	3416.162	2038.005	1071.312	1037.717	6933.450	4406.707

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.259	-0.322	—	1.292	-0.736	-1.785	1.072	-2.853	—	—	—	—

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