Hg_chrom7_TN10mRNA_14344
Organism: Heterodera glycines Gene Locus: chr7:6383694-6386990 Feature type: polypeptideProtein Sequence
Length: 523
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.845 | 0.578 | 0.834 | 1.187 | 0.86 | 1.569 | 0.774 | 2.199 | 0.85 | 1.111 | 0.579 | 1.237 | 1.434 | 1.36 | 1.288 | 1.557 | 0.47 | 1.043 | 1.03 | 0.45 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13537
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKAIESLVKKLKDRRE,RKVFDLRWAYVEMCRRREN
|
82-107
|
0.937
|
— | — | — | — |
0.000
|
— | — |
0.692
|
0.131
|
0.009
|
0.558
|
0.098
|
0.131
|
0.169
|
0.010
|
0.167
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004600
|
2.000
|
1.000
|
Hsc_gene_8327.t1
|
Hsc_gene_8327.t1
|
— |
P45897.1 Dwarfin sma-4 [Caenorhabditis elegans]
|
KAI1721182.1 MH2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005667|GO:0006355
|
GO:0008150_0.907|GO:0009987_0.829|GO:0065007_0.818|GO:0050789_0.804|GO:0050794_0.786|GO:0005575_0.778|GO:0110165_0.766|GO:0032501_0.735|GO:0032502_0.712|GO:0005622_0.701|GO:0048856_0.700|GO:0008152_0.668|GO:0048518_0.664|GO:0048522_0.655|GO:0044238_0.654|GO:0050896_0.654|GO:0007275_0.648|GO:0043170_0.642|GO:0019222_0.633|GO:0003674_0.619|GO:0080090_0.618|GO:0016020_0.615|GO:0060255_0.614|GO:0051716_0.598|GO:0043226_0.577|GO:0007154_0.569|GO:0043229_0.569|GO:0023052_0.567|GO:0044237_0.560|GO:0005488_0.555|GO:0009058_0.554|GO:0007165_0.552|GO:0031323_0.547|GO:0048519_0.544|GO:0043227_0.540|GO:0044249_0.536|GO:0043231_0.534|GO:0009059_0.529|GO:0030154_0.527|GO:0048869_0.527|GO:0006139_0.524|GO:0010467_0.523|GO:0009889_0.518|GO:0031326_0.518|GO:0010468_0.516|GO:0010556_0.516|GO:0034654_0.513|GO:0048513_0.511|GO:0090304_0.507|GO:0016070_0.505|GO:0141187_0.505|GO:0032774_0.503
|
IPR001132+298-509_299-509_300-523+|IPR003619+37-145_43-142+|IPR008984+272-520+|IPR013019+24-147+|IPR013790+20-521+|IPR017855+292-523+|IPR036578+11-150_26-142+
|
SM00523+37-145+|SM00524+298-509+
|
PF03165+43-142+MH1_domain|PF03166+299-509+MH2_domain
|
G3DSA:2.60.200.10:FF:000002+292-522+Mothers_against_decapentaplegic_homolog
|
PTHR13703+20-521+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13
|
1.000
|
14-523
|
1u7v_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
58015.920
|
7.729
|
13.500
|
24.283
|
12.428
|
46.654
|
53.346
|
14.532
|
9.751
|
52.008
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2004.793
|
2076.340
|
1708.833
|
1808.348
|
1590.349
|
1190.453
|
1807.089
|
1845.838
|
696.371
|
3738.473
|
2434.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.512
|
-0.337
|
0.191
|
-0.217
|
-0.403
|
0.612
|
0.524
|
— |
-2.551
|
— | — | — | — |
No JSON data available for plots.