Hg_chrom7_TN10mRNA_14345
Organism: Heterodera glycines Gene Locus: chr7:6393125-6393851 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.045 | 0.817 | 0.775 | 1.217 | 0.864 | 0.869 | 0.843 | 0.874 | 1.746 | 1.447 | 0.991 | 1.717 | 1.188 | 0.917 | 0.482 | 0.921 | 0.596 | 1.296 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13538
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.403
|
0.659
|
0.010
|
0.622
|
0.051
|
0.021
|
0.039
|
0.034
|
0.113
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004604
|
2.000
|
1.000
|
Hsc_gene_8399.t1
|
— | — |
A7RWC9.1 Inosine triphosphate pyrophosphatase [Nematostella vectensis]
|
XP_046845322.1 inosine triphosphate pyrophosphatase-like [Xenia sp. Carnegie-2017]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009143|GO:0047429
|
GO:0003674_0.730|GO:0005575_0.672|GO:0008150_0.659|GO:0110165_0.658|GO:0005622_0.607|GO:0009987_0.597|GO:0005737_0.570|GO:0016020_0.534|GO:0008152_0.523|GO:0043226_0.513|GO:0044238_0.501
|
IPR002637+6-177_9-173_54-173+|IPR029001+1-177_5-176+
|
— |
PF01725+9-173+Ham1_family
|
G3DSA:3.90.950.10:FF:000003+2-177+Inosine_triphosphate_pyrophosphatase
|
PTHR11067+6-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-178
|
8ji1_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
20131.360
|
8.813
|
5.500
|
27.528
|
11.798
|
44.382
|
55.618
|
15.730
|
11.798
|
44.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
253.969
|
421.027
|
198.097
|
170.762
|
166.578
|
123.257
|
116.621
|
172.714
|
133.638
|
497.489
|
341.553
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.318
|
-1.439
|
— | — |
-0.420
|
— | — |
-0.424
|
— | — | — | — | — |
No JSON data available for plots.