Hg_chrom7_TN10mRNA_14347
Organism: Heterodera glycines Gene Locus: chr7:6396458-6398823 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.346 | 1.592 | 0.703 | 0.411 | 1.24 | 1.145 | 0.602 | 1.19 | 1.19 | 1.086 | 0.947 | 1.576 | 1.323 | 0.801 | 1.093 | 1.616 | 1.22 | 1.082 | 1.145 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13540
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
19-39
|
0.996
|
2-42
|
1.000
|
— | — |
0.000
|
— | — |
0.110
|
0.929
|
0.073
|
0.214
|
0.018
|
0.034
|
0.079
|
0.021
|
0.033
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011456
|
1.000
|
1.000
|
Hsc_gene_8401.t1
|
Hsc_gene_8401.t1
|
— | — |
KAI6188017.1 ApaG domain-containing protein [Aphelenchoides besseyi];KAI6201294.1 ApaG domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0008150_0.936|GO:0005575_0.902|GO:0110165_0.897|GO:0009987_0.881|GO:0005622_0.860|GO:0016020_0.819|GO:0043226_0.817|GO:0043229_0.798|GO:0005737_0.791|GO:0008152_0.787|GO:0043227_0.772|GO:0044237_0.769|GO:0043231_0.765|GO:0005739_0.564
|
IPR011722+51-184_54-111+|IPR036623+51-119_54-112+
|
SM00992+51-184+
|
PF08755+54-111+Hemimethylated_DNA-binding_protein_YccV_like
|
— |
PTHR14289+22-333+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
336-336
|
1.000
|
1-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
38095.060
|
7.802
|
5.000
|
25.298
|
10.417
|
55.357
|
44.643
|
13.988
|
11.310
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2308.090
|
857.752
|
848.199
|
1277.525
|
1711.754
|
1947.802
|
1440.708
|
1878.524
|
802.222
|
5760.381
|
3635.455
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.246
|
0.437
|
0.700
|
0.390
|
0.201
|
-0.425
|
— |
-0.239
|
— | — | — | — | — |
No JSON data available for plots.