SCN Proteipedia

Hg_chrom7_TN10mRNA_14349

Organism: Heterodera glycines Gene Locus: chr7:6401326-6404119 Feature type: polypeptide

Protein Sequence

Length: 683

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.613	1.056	1.251	0.808	1.586	0.826	0.784	0.659	1.432	0.969	1.065	1.378	1.057	0.676	1.793	1.192	0.72	1.065	0.225	0.345	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13542	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRASRIDEQIKRNRQR,KKLCPHLLIVPCNFSKYKR,GEKKAKNGRKGGGQKRKRRREESERKRDGNRK	—	—	—	—	—	—	0.000	—	—	0.902	0.186	0.008	0.246	0.019	0.031	0.059	0.026	0.033	0.015

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011458	1.000	1.000	Hsc_gene_8403.t1	Hsc_gene_8403.t1	—	P34409.3 DNA polymerase kappa [Caenorhabditis elegans]	KAI1721270.1 impB/mucB/samB family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003684\|GO:0003887\|GO:0006281	GO:0008150_0.926\|GO:0009987_0.878\|GO:0050896_0.779\|GO:0051716_0.728\|GO:0006950_0.692\|GO:0008152_0.679\|GO:0043170_0.679\|GO:0044238_0.675\|GO:0033554_0.666\|GO:0006139_0.646\|GO:0006974_0.644\|GO:0005575_0.640\|GO:0110165_0.638\|GO:0090304_0.629\|GO:0009058_0.597\|GO:0044237_0.591\|GO:0044249_0.590\|GO:0006259_0.588\|GO:0009059_0.587\|GO:0005622_0.572\|GO:0016020_0.556\|GO:0006281_0.542\|GO:0034654_0.542\|GO:0141187_0.529\|GO:0043226_0.516	IPR001126+87-322_90-289+\|IPR017961+388-495+\|IPR022880+88-490+\|IPR024728+304-334+\|IPR036775+385-496_388-488+\|IPR043128+150-300+\|IPR043502+60-370+\|IPR050116+6-666+	—	PF00817+90-289+impB/mucB/samB_family\|PF11798+304-334+IMS_family_HHH_motif\|PF11799+388-495+impB/mucB/samB_family_C-terminal_domain	G3DSA:3.30.1490.100:FF:000004+385-496+DNA_polymerase_IV\|G3DSA:3.40.1170.60:FF:000012+95-149+Putative_DNA-directed_polymerase_kappa	PTHR11076+6-666+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	506-683	1.000	1-505	1t94_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.684	76923.160	6.595	0.500	33.529	6.589	54.026	45.974	17.130	16.398	48.902

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	lightcyan	1032.321	1406.225	1186.515	883.223	840.594	689.236	1272.385	766.892	1208.799	967.904	1071.145

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.476	-0.808	-0.316	—	-0.272	0.896	—	0.874	—	—	—	—	—

No JSON data available for plots.

Back to Browser