SCN Proteipedia

Hg_chrom7_TN10mRNA_14350

Organism: Heterodera glycines Gene Locus: chr7:6404244-6406810 Feature type: polypeptide

Protein Sequence

Length: 215

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.757	1.19	0.254	0.642	1.24	1.67	0.443	2.093	0.62	1.508	1.057	0.547	1.163	1.521	1.519	1.462	1.22	0.352	0.716	0.274	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13543	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	3.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.873

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	PRTRKSKRR,RKSKRRELTEEEKRPRT	—	—	74-128	1.000	—	—	0.000	—	—	0.876	0.106	0.008	0.259	0.056	0.079	0.115	0.009	0.041	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011459	1.000	1.000	Hsc_gene_8404.t1	Hsc_gene_8404.t1	—	P34326.3 Homeobox protein engrailed-like ceh-16 [Caenorhabditis elegans]	KAI1729306.1 homeobox domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.916\|GO:0009987_0.851\|GO:0032502_0.841\|GO:0048856_0.841\|GO:0032501_0.807\|GO:0007275_0.744\|GO:0048869_0.715\|GO:0030154_0.711\|GO:0065007_0.674\|GO:0050789_0.672\|GO:0050794_0.667\|GO:0048731_0.658\|GO:0005575_0.636\|GO:0110165_0.630\|GO:0008152_0.627\|GO:0019222_0.627\|GO:0031323_0.627\|GO:0044237_0.627\|GO:0043170_0.620\|GO:0060255_0.620\|GO:0005622_0.619\|GO:0009058_0.619\|GO:0009059_0.619\|GO:0010467_0.619\|GO:0043226_0.619\|GO:0044249_0.619\|GO:0043229_0.613\|GO:0009889_0.611\|GO:0010556_0.611\|GO:0031326_0.611\|GO:0044238_0.607\|GO:0080090_0.607\|GO:0010468_0.604\|GO:0016020_0.592\|GO:0003674_0.566\|GO:0005488_0.566\|GO:0006139_0.561\|GO:0006351_0.561\|GO:0016070_0.561\|GO:0032774_0.561\|GO:0034654_0.561\|GO:0090304_0.561\|GO:0141187_0.561\|GO:0019219_0.554\|GO:0051252_0.554\|GO:2001141_0.554\|GO:0009653_0.552\|GO:0006355_0.549\|GO:0003676_0.534\|GO:0097159_0.534\|GO:0043227_0.528\|GO:0007399_0.523\|GO:0048513_0.523\|GO:0043231_0.520\|GO:0006366_0.508\|GO:0003677_0.505\|GO:0006357_0.504\|GO:0043228_0.502\|GO:0043232_0.502\|GO:0005634_0.501	IPR000047+163-172_172-188+\|IPR001356+132-192_134-196_135-191_135-192+\|IPR009057+134-201+\|IPR017970+167-190+\|IPR020479+156-167_171-181_181-190+\|IPR050720+41-197+	SM00389+134-196+	PF00046+135-191+Homeodomain	G3DSA:1.10.10.60:FF:000189+104-194+Homeobox_protein_engrailed-like	PTHR24341+41-197+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-50;111-215	1.000	51-110	3zob_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.848	24358.640	10.548	16.500	27.442	10.233	56.744	43.256	18.605	8.837	46.512

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	109.597	211.858	262.208	127.234	82.141	64.171	92.715	193.072	24.843	73.328	52.549

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.873	-0.935	-0.664	—	0.542	1.485	-0.915	—	—	—	—	—

No JSON data available for plots.

Back to Browser