Hg_chrom7_TN10mRNA_14351
Organism: Heterodera glycines Gene Locus: chr7:6407936-6408697 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.034 | 0.303 | 0.575 | 1.944 | 1.282 | 0.728 | 1.111 | 0.988 | 0.676 | 1.936 | 1.634 | 1.698 | 0.534 | 2.154 | 0.397 | 0.273 | 1.178 | 0.0 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13544
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKSK,KRRMERFVGELRKRMAK,RKGRCFVKIPKIAEKRVKQ,AEKRVKQAKEQNEQRTPEKEKRRMERFVGELRKRM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.846
|
0.239
|
0.010
|
0.267
|
0.043
|
0.014
|
0.036
|
0.003
|
0.021
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011460
|
1.000
|
1.000
|
Hsc_gene_8405.t1
|
Hsc_gene_8405.t1
|
— |
P53927.1 Ribosome biogenesis protein 15 [Saccharomyces cerevisiae S288C]
|
KAF7636375.1 SAM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.914|GO:0110165_0.906|GO:0005622_0.899|GO:0043226_0.811|GO:0043229_0.800|GO:0016020_0.761|GO:0043227_0.731|GO:0043231_0.716|GO:0008150_0.706|GO:0009987_0.665|GO:0005634_0.640|GO:0031974_0.533|GO:0043233_0.532|GO:0070013_0.531|GO:0043228_0.530|GO:0043232_0.530|GO:0031981_0.527|GO:0003674_0.511
|
IPR000504+21-98_22-94_25-91+|IPR012677+1-102+|IPR035979+15-96+
|
SM00360+22-94+
|
PF00076+25-91+RNA_recognition_motif
|
— |
PTHR46754+14-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-180
|
5t9p_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
21163.580
|
10.671
|
20.000
|
38.889
|
11.111
|
52.778
|
47.222
|
25.556
|
13.333
|
36.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
1233.451
|
417.744
|
1049.177
|
1453.756
|
1248.128
|
1066.079
|
1055.255
|
830.880
|
1475.899
|
1619.040
|
1557.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.099
|
1.662
|
0.580
|
-0.252
|
-0.212
|
— |
-0.464
|
0.489
|
— | — | — | — | — |
No JSON data available for plots.