Hg_chrom7_TN10mRNA_14352
Organism: Heterodera glycines Gene Locus: chr7:6409044-6411784 Feature type: polypeptideProtein Sequence
Length: 519
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.434 | 1.016 | 0.332 | 1.381 | 1.136 | 0.551 | 0.674 | 1.199 | 1.406 | 1.226 | 1.133 | 1.659 | 0.667 | 0.983 | 1.321 | 0.821 | 0.788 | 0.889 | 0.453 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13545
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KKHK,RLSKFFRRK
|
— | — | — | — |
1-23
|
0.776
|
0.844
|
1.000
|
1.000
|
0.273
|
0.266
|
0.081
|
0.267
|
0.618
|
0.167
|
0.263
|
0.535
|
0.325
|
0.004
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004609
|
1.000
|
2.000
|
Hsc_gene_8406.t1;Hsc_gene_8406.t2
|
Hsc_gene_8406.t1;Hsc_gene_8406.t2
|
— |
G5EF60.1 Stromal interaction molecule 1 [Caenorhabditis elegans]
|
KAH7731501.1 Protein STIM-1 c [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005246|GO:0005515
|
GO:0008150_0.957|GO:0005575_0.938|GO:0110165_0.938|GO:0009987_0.905|GO:0016020_0.872|GO:0065007_0.852|GO:0050789_0.833|GO:0003674_0.809|GO:0005622_0.801|GO:0071944_0.784|GO:0051179_0.781|GO:0005488_0.779|GO:0005886_0.777|GO:0051234_0.762|GO:0043226_0.757|GO:0006810_0.755|GO:0043229_0.746|GO:0050794_0.729|GO:0005737_0.715|GO:0032879_0.707|GO:0051049_0.698|GO:0006811_0.679|GO:0006812_0.676|GO:0030001_0.676|GO:0005515_0.673|GO:0006816_0.670|GO:0098772_0.583|GO:0002115_0.574|GO:0048518_0.558|GO:0005246_0.556|GO:0016247_0.556|GO:0099106_0.556|GO:0141108_0.556|GO:0043227_0.549|GO:0048522_0.548|GO:0043231_0.518
|
IPR001660+116-187_118-184_119-177+|IPR013761+108-188_122-188+|IPR032393+296-393+|IPR037608+265-496+
|
SM00454+116-187+
|
PF07647+118-184+SAM_domain_(Sterile_alpha_motif)|PF16533+296-393+STIM1_Orai1-activating_region
|
— |
PTHR15136+265-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-519
|
6pw7_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
58793.730
|
6.215
|
-1.500
|
28.131
|
10.019
|
52.987
|
47.013
|
14.258
|
13.873
|
46.628
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2110.922
|
2274.895
|
2324.371
|
1264.774
|
1099.056
|
1552.177
|
1933.862
|
3365.323
|
783.746
|
3467.054
|
2317.065
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.199
|
-0.984
|
-0.769
|
-0.234
|
0.512
|
0.327
|
1.013
|
-0.657
|
-2.253
|
— | — | — | — |