SCN Proteipedia

Hg_chrom7_TN10mRNA_14355

Organism: Heterodera glycines Gene Locus: chr7:6419913-6424446 Feature type: polypeptide

Protein Sequence

Length: 726

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.993	0.673	1.002	0.475	2.227	1.413	0.754	1.722	0.643	0.763	0.417	0.891	0.765	1.113	2.474	0.885	0.858	0.689	1.06	0.648	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13548	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRRR,GRRKDGAADPRRPRRHRPE	—	—	—	—	—	—	0.000	—	—	0.267	0.108	0.014	0.695	0.174	0.274	0.167	0.014	0.523	0.059

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011461	1.000	1.000	Hsc_gene_12611.t1	Hsc_gene_12611.t1	—	Q9BKZ9.2 Protein Fe65 homolog [Caenorhabditis elegans]	KAI3413552.1 Phosphotyrosine interaction domain (PTB/PID) [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001540	GO:0008150_0.954\|GO:0005575_0.879\|GO:0110165_0.876\|GO:0005622_0.823\|GO:0009987_0.740\|GO:0065007_0.713\|GO:0043226_0.697\|GO:0003674_0.695\|GO:0050789_0.695\|GO:0050794_0.678\|GO:0043229_0.677\|GO:0005488_0.662\|GO:0016020_0.594\|GO:0032501_0.593\|GO:0032502_0.581\|GO:0048856_0.581\|GO:0007275_0.562\|GO:0048519_0.547\|GO:0048523_0.532\|GO:0005737_0.531\|GO:0048518_0.501	IPR006020+417-564_421-555_426-555_592-722_600-717_601-722+\|IPR011993+419-564_582-719+\|IPR039576+19-722+	SM00462+417-564_592-722+	PF00640+426-555_600-717+Phosphotyrosine_interaction_domain_(PTB/PID)	G3DSA:2.30.29.30:FF:000034+582-719+amyloid_beta_A4_precursor_protein-binding_family_B_member_2	PTHR14058+19-722+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-503	1.000	504-726	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.623	83452.610	5.401	-16.500	37.190	9.780	57.025	42.975	18.320	18.871	46.419

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	4553.502	8941.088	4116.699	933.923	502.163	691.995	872.132	2235.174	9491.462	5943.035	7463.790

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.349	-3.396	-2.031	-0.926	0.476	0.346	1.589	-1.214	—	-3.173	-3.338	—	—

No JSON data available for plots.

Back to Browser